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proteoid root #588

Closed planteome-user closed 9 years ago

planteome-user commented 10 years ago

Request from collaborators at New Phytologist: Proteoid root(s), also known as cluster roots isn't in the PO at present, almost certainly because although the PO now covers a wide range of plant types, proteoid roots are specific to one family of plants, the Proteaceae of the Southern Hemisphere.

Reported by: cooperl09

Original Ticket: obo/plant-ontology-po-term-requests/588

planteome-user commented 10 years ago

I did a quick search of the literature and see that this term is also used for several species, including legumes such as Lupin. The cluster roots form as a response to phosphorous deficiency.

http://aob.oxfordjournals.org/content/85/6/921.short http://www.plantphysiol.org/content/121/2/317 http://link.springer.com/article/10.1007/s11104-004-2725-7

from Watts and Evans, (Plant Physiology,1999): "We define a proteoid root as an entire root from any species that forms one or more clusters along its length. A cluster has closely spaced lateral roots (rootlets) of limited growth (Fig.1). The terms proteoid root, cluster root, and root cluster have all been used in the literature to describe either the proteoid root axis or clusters of rootlets, and caution should be taken when comparing studies because the definitions of these terms vary."

I think this is important to include as a term in the PO, as there are numerous studies concerning the mechanisms of formation, etc.

Original comment by: cooperl09

austinmeier commented 9 years ago

Added term: proteoid root (PO:0000067) with def'n: A root (PO:0009005) from any species that forms one or more clusters along its length. A cluster has closely spaced lateral roots (PO:0020121) of limited growth. And xref: PO_GIT:588, related synonyms: root cluster, and cluster root.

cooperl09 commented 9 years ago

Looks good, please include comment and parent.

austinmeier commented 9 years ago

term: proteoid root (PO:0000067), is_a root (PO:0009005) comment: The terms proteoid root, cluster root, and root cluster have all been used in the literature to describe either the proteoid root axis or clusters of rootlets, and caution should be taken when comparing studies because the definitions of these terms vary.-from Watts and Evans, (Plant Physiology,1999) DBXref: PMID:10517822 synonyms: cluster root, and root cluster (both related)

cooperl09 commented 9 years ago

Slightly modified def'n and comment:
proteoid root (PO:0000067): A root (PO:0009005) that forms one or more clusters of closely spaced lateral roots (PO:0020121) of limited growth along its length.

Comment: The terms proteoid root, cluster root, and root cluster have all been used in the literature to describe either the proteoid root axis or clusters of rootlets, and caution should be taken when comparing studies because the definitions of these terms vary (Watts and Evans, 1999; Plant Physiology).