endosperm anatomy and morphology trait (TO:0000575)

[planteome-user]

proposed child of seed anatomy and morphology trait (TO:0000184)

• kernel type - Visual rating of kernel type from 1 -11 where 1= floury, 3= dent, 6= flint, 7= pop, 8= sweet, 9= Opaque 2/QPM, 10 Tunicate and 11= waxy (CO_450:0000000:0000020)

Reported by: alexandraviel

Original Ticket: obo/plant-trait-ontology-to-requests/132

[planteome-user]

Though they are kernel type traits identified visually, these are essentially endosperm quality traits and we have them e.g.

endosperm quality (TO:0000587) [i] glutinous endosperm (TO:0000098) [i] sugary endosperm (TO:0000099) [i] shrunken endosperm (TO:0000100) [i] floury endosperm (TO:0000104) [i] dull endosperm (TO:0000105) [i] endospermless (TO:0000231) [i] chalky endosperm (TO:0000266) [i] grain belly percent white (TO:0000383)

[i] grain core percent white (TO:0000390) #0

[i] grain core area white (TO:0000665) #0

[i] globulin protein content (TO:0000710) #0

[i] brittle endosperm (TO:0000713) #0

[i] etched endosperm (TO:0000716) #0

[i] rough endosperm (TO:0000717) #0

Original comment by: jaiswalp

[planteome-user]

ok, can be closed

Original comment by: alexandraviel

[planteome-user]

• summary: kernel type --> endosperm quality traits (TO:0000587)
• assigned_to: Laurel Cooper

Original comment by: cooperl09

[planteome-user]

Made these endosperm traits is_a children of endosperm anatomy and morphology trait and also kept them as endosperm quality trait (dual parentage) Linked them to endosperm quality trait in the comment.

[i] glutinous endosperm (TO:0000098) [i] sugary endosperm (TO:0000099) [i] shrunken endosperm (TO:0000100) [i] floury endosperm (TO:0000104) [i] dull endosperm (TO:0000105) [i] endospermless (TO:0000231) [i] chalky endosperm (TO:0000266) [i] brittle endosperm (TO:0000713) [i] etched endosperm (TO:0000716) [i] rough endosperm (TO:0000717)

Original comment by: lauramooray66

[planteome-user]

brittle endosperm was already an existing child of endosperm anatomy and morphology trait

Original comment by: lauramooray66

[planteome-user]

Where is the xref from CO_450:0000000:0000020?? This is not one of the GCP ontology identifiers:

http://pantheon.generationcp.org/index.php?option=com_content&task=view&id=20&Itemid=37

• kernel type - Visual rating of kernel type from 1 -11 where 1= floury, 3= dent, 6= flint, 7= pop, 8= sweet, 9= Opaque 2/QPM, 10 Tunicate and 11= waxy ()

It looks like CO_322:0000168 Kernel type in the Maize trait ontology

Original comment by: cooperl09