infructescence morphology trait (TO:0000920) and sub-classes.

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infructescence morphology trait (TO:0000920) and sub-classes. #244

Open planteome-user opened 10 years ago

planteome-user commented 10 years ago

Created new term:

infructescence anatomy and morphology trait (TO:0000920: A reproductive shoot system anatomy and morphology trait (TO:0000786 which is associated with an infructescence (PO:0006342.

Reported by: cooperl09

Original Ticket: obo/plant-trait-ontology-to-requests/244

planteome-user commented 10 years ago

Moved these all to be sub-classes of the new term. Need to work on the definitions. Refer to new PO term: ear infructescence (PO:0025597; [plant-ontology-po-term-requests:#536]).

ear diameter (TO:0000433): Diameter measurement of a corn ear. is_a inflorescence diameter (TO:0000679).
ear circumference (TO:0000681): undefined
ear number (TO:0000443): Number of ears found in a plant or and average number present in population.
ear length (TO:0000431): undefined, grayed out?

Original comment by: cooperl09

planteome-user commented 10 years ago

Revised def'n: ear length (TO:0000431): An infructescence anatomy and morphology trait (TO:0000920) that is associated with the length of ear infructescence (PO:0025597) from base to tip.

Comment: Refers to length (PATO:0000122): A 1-D extent quality which is equal to the distance between two points. In maize, this is measured in centimeters.

Original comment by: cooperl09

planteome-user commented 10 years ago

We had existing term: inflorescence weight (TO:0000583)- Average weight of the inflorescence carrying the mature fruits from the plants or tillers in a given study. This is an infructescence, not and inflorescence.

Was is_a yield trait (TO:0000371), moved to be is_a infructescence anatomy and morphology trait (TO:0000920). Could also go in the yield category once we work on it some more.

Revised name and definition: infructescence weight (TO:0000583): An infructescence anatomy and morphology trait (TO:0000920) that is associated with the average weight of an infructescence bearing mature fruit (PO:0009001).

Original comment by: cooperl09

planteome-user commented 10 years ago

Made ear weight (TO:0000923): a child of the revised term: An infructescence weight (TO:0000583) trait that is associated with the weight (mass) of an ear infructescence (PO:0025597).

Original comment by: cooperl09

planteome-user commented 10 years ago

Added def'n for existing term that had no definition:

ear circumference (TO:0000681): An infructescence anatomy and morphology trait (TO:0000920) that is associated with the circumference of an ear infructescence (PO:0025597). comment: Refers to circumference (PATO:0001648): An 1-D extent quality which is equal to the length of the closed curve of a circle. Ear circumference (TO:0000681) is equal to ear diameter (TO:0000433) times 3.14.

Original comment by: cooperl09

cooperl09 commented 8 years ago

Moved ear weight (TO:0000923) to be an ear infructescence morphology trait (TO:0000976), rather than an infructescence weight (TO: 0000583) trait, but kept infructescence weight as a 2nd parent.

Revised def'n: An ear infructescence morphology trait (TO:0000976) that is the weight of an ear infructescence (PO:0025597).