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Planteome / plant-trait-ontology

Explore the Plant Trait Ontology on the Planteome site.
http://browser.planteome.org/amigo/term/TO:0000387#display-lineage-tab
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Need seed hardness term #327

Open maxglycine opened 9 years ago

maxglycine commented 9 years ago

A cooking or brewing quality (TO:0000667) that is the resistance of a cooked seed (PO:0009010) to penetration. This is a seed quality trait in soybean and maybe other legumes

ejohnson1 commented 9 years ago

added term -- seed hardness (TO:0000990): A seed morphology trait (TO:0000184) which is the hardness of a seed (PO:0009010). added dbxref -- PATO:0000990

austinmeier commented 9 years ago

Posted an issue with PATO (their GitHub repo) about the definition of "hardness" Currently it has the same definition as "flexibility", and needs to be changed/modified to reflect the definition of hardness.

https://github.com/pato-ontology/pato/issues/80

edit: PATO has accepted my change.

maxglycine commented 9 years ago

This definition does not quite describe the trait. Firstly, the seed needs to be cooked. It can’t be raw or dry. Secondly, the “hardness” refers to the ability of a cooked seed to be penetrated with a penetrometer. At the meeting, Barry said that “cooking traits” might be difficult. But this is definitely a cooking trait.

How about “seed hardness (TO:xxxxx): A seed cooking trait (TO:yyyyyy) which is the resistance of a cooked seed to penetration."

On Nov 19, 2015, at 1:49 PM, ejohnson1 notifications@github.com<mailto:notifications@github.com> wrote:

added term -- seed hardness (TO:0000990): A seed morphology trait (TO:0000184) which is the hardness of a seed (PO:0009010). added dbxref -- PATO:0000990

— Reply to this email directly or view it on GitHubhttps://github.com/Planteome/plant-trait-ontology/issues/327#issuecomment-158174495.

Rex Nelson Computational Biologist G329 Agronomy Hall Iowa State University Ames, IA 50011 nelsonrt@iastate.edumailto:nelsonrt@iastate.edu 515-294-1297

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