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Planteome / plant-trait-ontology

Explore the Plant Trait Ontology on the Planteome site.
http://browser.planteome.org/amigo/term/TO:0000387#display-lineage-tab
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mineral and ion content related trait revision (TO:0000465) #373

Open austinmeier opened 8 years ago

austinmeier commented 8 years ago

revised the definition of this term

old: The total mineral and/or ion content measured in a plant or a plant part.

New: A biochemical trait (TO:0000277) that is the amount of a particular mineral or ion constituent occurring in a plant anatomical entity (PO:0025131).

cooperl09 commented 8 years ago

Propose rename class to “chemical entity-related trait”

chemical entity (CHEBI:24431): A chemical entity is a physical entity of interest in chemistry including molecular entities, parts thereof, and chemical substances.

Propose revised def’n: Currently: A biochemical trait (TO:0000277) that is the amount of a particular mineral or ion constituent occurring in a plant anatomical entity (PO:0025131).

Proposed: A biochemical trait (TO:0000277) which is a quality of a chemical entity (CHEBI:24431) that is part of a cellular component (GO:0005575) or a plant anatomical entity (PO:0025131).

Comment: chemical entity (CHEBI:24431) includes atoms (CHEBI_33250), molecular entities (CHEBI_23367), such as ions (CHEBI_24870), and chemical substances (CHEBI_59999).

austinmeier commented 8 years ago

Agreed, this works better because of the ChEBI definitions of "mineral" doesn't quite fit here.