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Planteome / planteome-annotation-data

This is a place to discuss issues around the Planteome annotation data and store useful scripts etc.
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Links to IRIS database not working in germplasm annotations #12

Closed cooperl09 closed 6 years ago

cooperl09 commented 6 years ago

The links to the germplasm source for these annotations are not working.
They appear to be from: to_germplasm_O.sativa_IRRI3K.assoc

for example from this page: http://browser.planteome.org/amigo/gene_product/IRIC:IRIS_313-8922 http://oryzasnp.org/iric-portal/_variety.zul?irisid=IRIS_313-8922 And: http://browser.planteome.org/amigo/gene_product/IRIC:IRIS_313-8994 http://oryzasnp.org/iric-portal/_variety.zul?irisid=IRIS_313-8994

etc

austinmeier commented 6 years ago

After digging around IRRI's site, and links, I cannot seem to find a URL that corresponds to individual varieties' pages. I have contacted Jeffery Detras from IRRI to see if he has an answer to this.

austinmeier commented 6 years ago

Jeffery replied to my request, and gave me the correct URL formatting for these links. I have updated the db_xrefs.yaml file to reflect this change:
https://github.com/Planteome/go-site-xrefs-fork/commit/2b44d9d24e22afa2bcdfcfc7bf05bc911a19e0df