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Planteome / planteome-annotation-data

This is a place to discuss issues around the Planteome annotation data and store useful scripts etc.
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Error in to_germplasm_O.sativa_IRRI3K.assoc file #27

Open cooperl09 opened 3 years ago

cooperl09 commented 3 years ago

Some of the germplasm is annotated to TO:0000294 leaf sheath auricle color, but the descriptors refer to basal leaf sheath color (TO:0000367)

for example: IRIC IRIS_313-8783 105 TO:0000294 PMID:16219924 IDA from_country(Sri_Lanka) T 105 IRGC 40896-1 germplasm NCBITaxon:4530 06102016 Planteome:Austin_Meier has_phenotype_score(Basal_leafsheath_color_at_vegetative=60)

There are 2265 of these in the to_germplasm_O.sativa_IRRI3K.assoc file