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Planteome / samara

extracts plant trait data from open data sources like apsnet and ars-grin
MIT License
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descriptor name does not match descriptor id and definition #20

Closed jhpoelen closed 8 years ago

jhpoelen commented 8 years ago

It appears that descriptor names in GRIN scrape do not correspond to associated descriptor id and definitions.

For example the line:

GRINTaxon:104918 Medicago sativa L. subsp. falcata (L.) Arcang. GRINDesc:68104 Winter injury (WINTERINJ) In-vitro dry matter disappearance (ivdmd) expressed as a percent of the cultivar venal. Higher than 100% suggests low digestibility & higher by-pass protein. GRINMethod:391002 ALFALFA.PROTBYPASS.93.VOLENEC 79 GRINAccess:1305140 PI 405064

has Winter injury (WINTERINJ) as descriptor name for GRINDesc:68104 and definition In-vitro dry matter disappearance (ivdmd) expressed as a percent of the cultivar venal. Higher than 100% suggests low digestibility & higher by-pass protein..

Expected is that GRINDesc:68104 has descriptor name By pass protein (PROTBYPASS)

@austinmeier hope this helps . . . also, can you send me the full grin scrape that you did on your infrastructure?

austinmeier commented 8 years ago

Correct. GRINDesc:68001 (https://npgsweb.ars-grin.gov/gringlobal/descriptordetail.aspx?id=68001) shares data rows with 27 different Descriptor names:
100 Seed weight in grams (SEEDWGT) Acid soil tolerance (ACIDSOIL) Core subset (CORE) Crown bud number (CRWNBUDNUM) Crown origin (CROWNORIG) Days to maturity (DAYSMAT) Determinate taproot percentage (DETTAPPERC) Determinate taproot position (DETTAPPOS) Fibrous root mass (FIBRTMASS) Flower color (FLOWCOLOR) Frost damage (FROSTDAM) Image/picture_1 (IMAGE_1) Leaf acid detergent fiber (ADFLEAF) Leaf neutral detergent fiber (NDFLEAF) Leaf size (LEAFSIZE) Maturity (MATURITY) Salt germination - ic(50) valu (SALTGERM) Secondary root number (ROOTNUM2) Secondary root position (ROOTPOS2) Seedling year yield (SDLGYRYLD) Seed productivity (SEEDPROD) Stem acid detergent fiber (ADFSTEM) Stem leaf ratio (STEMLFRAT) Stem neutral detergent fiber (NDFSTEM) Tolerance to salt stress (SALTSTRESS) Unifoliate internode length (UILENGTH) Winter injury (WINTERINJ)