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Planteome / samara

extracts plant trait data from open data sources like apsnet and ars-grin
MIT License
5 stars 3 forks source link

ars-grin jenkins job fails after upgrade to scala 2.12 #32

Closed jhpoelen closed 7 years ago

jhpoelen commented 7 years ago

Scrape job setup at https://build.berkeleybop.org/job/extract-grin-traits/23/console failed due to change in scala version. @cmungall any chance you can update the start script to java -jar 'target/scala-2.12/samara-assembly-*.jar' scrape grin ?

snippet from jenkins console:

+ java -jar 'target/scala-2.11/samara-assembly-*.jar' scrape grin
Error: Unable to access jarfile target/scala-2.11/samara-assembly-*.jar
Build step 'Execute shell' marked build as failure
jhpoelen commented 7 years ago

PS Same applies to https://build.berkeleybop.org/job/extract-apsnet-diseases

jhpoelen commented 7 years ago

@cmungall @austinmeier I was wondering whether it might be pragmatic to give me access to planteome build jobs. . . don't want to keep bugging you about trivial issues and sit around idle while waiting.

cmungall commented 7 years ago

I made the changes, I'll chat with @kltm tomorrow about getting you set up

jhpoelen commented 7 years ago

Thanks for making the changes, looks like the job are now running again. apsnet completed, ars-grin scrape is in progress as I write.