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Planteome / samara

extracts plant trait data from open data sources like apsnet and ars-grin
MIT License
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adding manually matched targetTaxonName for APS plant hosts #61

Closed jhpoelen closed 5 years ago

jhpoelen commented 5 years ago

As communicated by @marieALaporte

[...] I realised that for some crops, the mapping of the host(s) of the diseases to NCBI was missing. Here is what I think they should be mapped to. [...]

nameOrig suggested NCBI id
DisplayTitle Diseases of Geranium (Pelargonium) Pelargonium × domesticum Bailey      (regal geranium or Lady Washington or      Martha Washington geranium; interspecific hybrids) Pelargonium × hortorum Bailey      (florists' or zonal geranium; interspecific hybrids) Pelargonium graveolens L'Her. ex Aiton      (scented geranium) Pelargonium peltatum (L.) L'Her. ex Aiton      (ivy geranium) NCBITaxon:4030    
DisplayTitle Diseases of Mustard (Brassica juncea (L.) Czernj. & J.M. Coulter var. crispifolia L.H. Bailey and B. nigra (L.) W. Koch) NCBITaxon:3707  
DisplayTitle Diseases of Pearl Millet (Pennisetum glaucum (L.) R. Br.) NCBITaxon:4543  
DisplayTitle Diseases of Pigeonpea (Cajanus cajan (L.) Millsp.) NCBITaxon:3821    
DisplayTitle Diseases of Pineapple (Ananas comosus (L.) Merr.) NCBITaxon:4615    
DisplayTitle Diseases of Primulas English primrose Primula vulgaris Huds. (P. acaulis) Polyanthus Primula Pruhonicensis hybrids Fairy primrose P. malacoides Franch. German primrose P. obconica Hance Chinese primrose P. sinensis Sabine ex Lindl. NCBITaxon:49647
DisplayTitle Diseases of Rapeseed = Canola (B. napus L. and Brassica rapa L. (= B. campestris L.)) NCBITaxon:3708 && NCBITaxon:3711  
DisplayTitle Diseases of Sorghum (Sorghum bicolor (L.) Moench) NCBITaxon:4558  
DisplayTitle Diseases of Sunflower (Helianthus annuus L.) and Jerusalem Artichoke (H. tuberosus L.) NCBITaxon:4232 && NCBITaxon:4233  
DisplayTitle Diseases of Sweet Cherry (Prunus avium L.) and Sour Cherry (P. cerasus L.) NCBITaxon:42229 && NCBITaxon:140311  
DisplayTitle Diseases of Tea (Camellia sinensis (L.) O. Kuntze) NCBITaxon:4442  
jhpoelen commented 5 years ago

Reviewed by @marieALaporte as per https://github.com/Planteome/samara/commit/26086f4483ca1381bae346b2a7f414742acf8b86#commitcomment-33817378 .