Open DayTimeMouse opened 1 week ago
Hi,
When I use read.maf to read maf file, but almost variants are silent(silent variants/all variants: 16874/17013).
I am unsure about that is annotation problem or something. df = read.maf('filter.vep.maf')
df = read.maf('filter.vep.maf')
plotmafSummary(maf = df, rmOutlier = T, showBarcodes = F, textSize = 0.4, addStat = 'median', dashboard = TRUE, titvRaw = FALSE)
-Reading -Validating -Silent variants: 16874 -Summarizing -Processing clinical data --Missing clinical data -Finished in 0.360s elapsed (3.499s cpu)
Best regards.
It's hard to know without seeing the data. If it is WGS, I guess it is possible.
Hi,
When I use read.maf to read maf file, but almost variants are silent(silent variants/all variants: 16874/17013).
I am unsure about that is annotation problem or something.
df = read.maf('filter.vep.maf')
Best regards.