How to calculate the p-value between the mutation profiles for the 3 groups

PoisonAlien / maftools

Summarize, Analyze and Visualize MAF files from TCGA or in-house studies.

http://bioconductor.org/packages/release/bioc/html/maftools.html

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How to calculate the p-value between the mutation profiles for the 3 groups #1059

Open sjb-a11y opened 1 month ago

sjb-a11y commented 1 month ago

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PoisonAlien commented 1 month ago

Hi,

I am not aware of such a test to compare multiple categorical groups. clinicalEnrichment() would perform pairwise and groupwise tests if it helps. You can also check the publication for the methods.