Closed yikiii closed 1 year ago
Hi, track_data <- track_extract(bigWigs = bwf$V4,custom_names= bwf$name,loci = paste0(chr,":",start_,"-",end_),binsize=1,nthreads=5)
track_data <- track_extract(bigWigs = bwf$V4,custom_names= bwf$name,loci = paste0(chr,":",start_,"-",end_),binsize=1,nthreads=5)
but:
Checking for bwtool installation All good! Found bwtool at: /nfs1/public2/User/name/biosoft/bwtool Parsing loci.. Queried region: NZ_CP029232.1:396913-401013 [4100 bps] Checking for files.. Generating windows [1 bp window size] Extracting signals Processing SRR2970503 .. Processing SRR2970502 .. Processing SRR2970504 .. Processing SRR2970502 .. Processing SRR2970506 .. invalid unsigned integer: "4e+05" invalid unsigned integer: "4e+05" Processing SRR2970502 .. invalid unsigned integer: "4e+05" invalid unsigned integer: "4e+05" invalid unsigned integer: "4e+05" invalid unsigned integer: "4e+05" Error in setnames(x, value) : Can't assign 1 names to a 0 column data.table Calls: track_extract ... colnames<- -> names<- -> names<-.data.table -> setnames
solved by add options(scipen = 999) to not use scientific notation.
options(scipen = 999)
Hi,
track_data <- track_extract(bigWigs = bwf$V4,custom_names= bwf$name,loci = paste0(chr,":",start_,"-",end_),binsize=1,nthreads=5)
but: