Custom gene annotation - alternative to UCSC

[jcm6t]

I am interested in RNA-seq bigwig visualization of gene exon read coverage but the experiment is for non black6 mice.

Enhancement request: read a custom annotation file (eg GTF) instead of going to UCSC.

Thanks. Joe.

[PoisonAlien]

Hi,

This is already implemented. You can pass a custom gtf to track_extract() with the argument gtf. Let me know if this works.

[jcm6t]

Thanks, I must have missed it in the documentation. I'll close this and reopen if there's an issue.