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PolarBean / DLC_ROI_tool

A tool for drawing ROIs on videos and analysing deeplabcut videos.
GNU Lesser General Public License v2.1
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TypeError: Cannot do inplace boolean setting on mixed-types with a non np.nan value #9

Open saulobritto opened 4 years ago

saulobritto commented 4 years ago

Hi,

I'm usign this tool to predict ROI in zebrafish videos. I'm analysing about 66 videos. In some of them, I got this error when Load the DLC File. Do you have any idea what is going on? Am I doing something wrong?

################## test1920 1920 top_left_X 0 im_width 1920 1920 top_left_X 0 im_width 1920 1920 Exception in Tkinter callback Traceback (most recent call last): File "C:\Users\User\anaconda3\envs\ROI_ENV\lib\tkinter__init.py", line 1883, in call return self.func(*args) File "C:\Windows\System32\DLC_ROI_tool\MousePositionTracker.py", line 194, in bodyparts_to_ROI My_ROI_df[truth_array]=ROI[1]['ROI'] File "C:\Users\User\anaconda3\envs\ROI_ENV\lib\site-packages\pandas\core\frame.py", line 3482, in setitem__ self._setitem_frame(key, value) File "C:\Users\User\anaconda3\envs\ROI_ENV\lib\site-packages\pandas\core\frame.py", line 3528, in _setitem_frame self._check_inplace_setting(value) File "C:\Users\User\anaconda3\envs\ROI_ENV\lib\site-packages\pandas\core\generic.py", line 5304, in _check_inplace_setting raise TypeError( TypeError: Cannot do inplace boolean setting on mixed-types with a non np.nan value ###################

Thank you in advance for your support.

PolarBean commented 4 years ago

hmm interesting ill look into this now.

PolarBean commented 4 years ago

Can you please send me the DLC file that is causing this error so i can replicate and fix?

PolarBean commented 4 years ago

harry.carey@sydney.edu.au

natalier11 commented 3 years ago

Hi there, I am having this same error. I've used the ROI tool successfully in the past but I am getting this error now when trying to load the DLC file associated with my video. Let me know if there has been any headway on this issue. My email is nrem@uab.edu, thank you!

Idavr commented 3 years ago

Hello! I am also having the same error when using the .h5 file. If it helps, when using the .csv file I get this error:

Exception in Tkinter callback Traceback (most recent call last): File "C:\Users\idavalik\AppData\Local\Continuum\anaconda3\envs\DLC_ROI\lib\site-packages\pandas\core\internals\managers.py", line 1675, in create_block_manager_from_blocks make_block( File "C:\Users\idavalik\AppData\Local\Continuum\anaconda3\envs\DLC_ROI\lib\site-packages\pandas\core\internals\blocks.py", line 2742, in make_block return klass(values, ndim=ndim, placement=placement) File "C:\Users\idavalik\AppData\Local\Continuum\anaconda3\envs\DLC_ROI\lib\site-packages\pandas\core\internals\blocks.py", line 142, in init raise ValueError( ValueError: Wrong number of items passed 9, placement implies 10

During handling of the above exception, another exception occurred:

Traceback (most recent call last): File "C:\Users\idavalik\AppData\Local\Continuum\anaconda3\envs\DLC_ROI\lib\tkinter__init.py", line 1883, in call return self.func(*args) File "C:\Users\idavalik\DLC_ROI_tool\MousePositionTracker.py", line 129, in bodyparts_to_ROI My_ROI_df=pd.DataFrame(np.zeros(X_data.shape),columns=mylist) File "C:\Users\idavalik\AppData\Local\Continuum\anaconda3\envs\DLC_ROI\lib\site-packages\pandas\core\frame.py", line 558, in init__ mgr = init_ndarray(data, index, columns, dtype=dtype, copy=copy) File "C:\Users\idavalik\AppData\Local\Continuum\anaconda3\envs\DLC_ROI\lib\site-packages\pandas\core\internals\construction.py", line 238, in init_ndarray return create_block_manager_from_blocks(block_values, [columns, index]) File "C:\Users\idavalik\AppData\Local\Continuum\anaconda3\envs\DLC_ROI\lib\site-packages\pandas\core\internals\managers.py", line 1687, in create_block_manager_from_blocks raise construction_error(tot_items, blocks[0].shape[1:], axes, e) ValueError: Shape of passed values is (54787, 9), indices imply (54787, 10)

Please let me know if there has been an update to this issue! Either here or on my e-mail: ida.v.rautio@ntnu.no. Thank you for your time!

sannatitus commented 2 years ago

I am also having this same error... If anyone has found a solution, I would really appreciate some advice at s.titus@ucl.ac.uk :)

anacastropsico commented 2 years ago

I have same error... (before I need changele short, because this erro: C:\Users\anaca\anaconda3\envs\ROI_ENV\lib\site-packages\pandas\core\frame.py:7134: FutureWarning: Sorting because non-concatenation axis is not aligned. A future version of pandas will change to not sort by default.

To accept the future behavior, pass 'sort=False'.

To retain the current behavior and silence the warning, pass 'sort=True'.

after this erro is show... Exception in Tkinter callback Traceback (most recent call last): File "C:\Users\anaca\anaconda3\envs\ROI_ENV\lib\tkinter__init.py", line 1883, in call return self.func(*args) File "C:\Users\anaca\Downloads\programas_de_rastreio\DLC\DLC_ROI_tool-master\MousePositionTracker.py", line 132, in bodyparts_to_ROI My_ROI_df[truth_array]=ROI[1]['ROI'] File "C:\Users\anaca\anaconda3\envs\ROI_ENV\lib\site-packages\pandas\core\frame.py", line 3482, in setitem__ self._setitem_frame(key, value) File "C:\Users\anaca\anaconda3\envs\ROI_ENV\lib\site-packages\pandas\core\frame.py", line 3528, in _setitem_frame self._check_inplace_setting(value) File "C:\Users\anaca\anaconda3\envs\ROI_ENV\lib\site-packages\pandas\core\generic.py", line 5304, in _check_inplace_setting raise TypeError( TypeError: Cannot do inplace boolean setting on mixed-types with a non np.nan value

PolarBean commented 2 years ago

Make sure you're using the version of pandas specified in the readme