Error warning when opening napari

[gschlafly]

When opening napari, I get the following error message even after a new installation. Some information seems to be saving in to the environment. I am going to try opening napari into a new virtual environment.

[gschlafly]

Note: These attempts are made on a Windows OS.

I created a new conda environment. I used the following command to install napari along with the napari-LF plugin.

pip install git+https://github.com/PolarizedLightFieldMicroscopy/napari-LF.git@NeuralNets_integration2

napari successfully opens with only the warning message of However, the napari-LF plugin fails to open when selected from the dropdown menu. Below is the output in the napari debugger.

Potential cause: Another package might need to be included in the setup.cfg file

[amitabhverma]

I'm a little confused with this issue. If this was a new napari installation, didn't it install the latest QT lib which should be >=5.12.3 and not 5.9.7 ? Does updating the QT lib to the recommended version change any messages ?

[amitabhverma]

BTW, the last error message probably is numpy related. I had to downgrade numpy to 1.21 since the latest (1.23) was giving issues.

[amitabhverma]

Tried a clean conda installation and was still getting our plugin disabled at startup and no way to enable it. Finally, the following did the trick:

In napari console:

from napari.settings import SETTINGS
SETTINGS.reset()

Restart napari

PS: still need to downgrade numpy==1.23.5 (https://github.com/PolarizedLightFieldMicroscopy/LFAnalyze-fundamentals/issues/3)

[gschlafly]

Numpy issues have (most likely) been resolved. The non-Neural Net files in the lfa folder can be replaced by those in the numpy branch.