PoonLab / Kaphi

Kernel-embedded ABC-SMC for phylodynamic inference
GNU Affero General Public License v3.0
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Meaning of attribute 'simulationTime' in XML template for MASTER #105

Closed gtng92 closed 6 years ago

gtng92 commented 7 years ago

This was a question about the meaning of simulationTime attribute in the XML input required for MASTER. What would be an appropriate time interval to use to generate trees and estimate parameters?

The units of time is up to the user to specify and to interpret. For example, simulationTime='10.0' could be in units of days, months, and years. This adds context to the parameter estimates. So beta=0.1 in a unit time of 10.0 is different than if the result was beta=0.1 in a unit time of 1000.0.