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PoonLab / Kaphi

Kernel-embedded ABC-SMC for phylodynamic inference
GNU Affero General Public License v3.0
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Generating MASTER replicates #113

Closed gtng92 closed 6 years ago

gtng92 commented 6 years ago

@ArtPoon mentioned using a parameter nTraj to generate nsample of trees from a single MASTER call.

This parameter is possible for the inheritanceEnsemble template run, generating 5 distinct phylogenetic trees if nsample=5. This was previously implemented in kamphir.

I am currently using inheritanceTrajectory in Kaphi, and including nTraj as an attribute seems to have no effect on the run, generating only 1 phylogenetic tree when nTraj = 5. There is no documentation for the possibility of using nTraj in tvaughn's MASTER wiki.

ArtPoon commented 6 years ago

Sorry, you need to be running inheritanceEnsemble instead of inheritanceTrajectory

On Sep 25, 2017, at 3:15 PM, Tammy Ng notifications@github.com wrote:

@ArtPoon mentioned using a parameter nTraj to generate nsample of trees from a single MASTER call.

This parameter is possible for the inheritanceEnsemble template run, generating 5 distinct phylogenetic trees if nsample=5. This was previously implemented in kamphir.

I am currently using inheritanceTrajectory in Kaphi, and including nTraj as an attribute seems to have no effect on the run, generating only 1 phylogenetic tree when nTraj = 5. There is no documentation for the possibility of using nTraj in tvaughn's MASTER wiki.

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gtng92 commented 6 years ago

Oh ok thanks