Closed ArtPoon closed 6 years ago
Duplicate of #120
Previously we had both sampling time (t.sample
) and simulation time (t.end
) as separate parameters. Since we are initially validating with only one sampling time point, these should be the same parameter.
Right now the only stopping criterion is if the epidemic goes extinct. We need to use some additional criterion to constrain the size of the tree (number of sampled tips) so that they are more comparable to the target (observed) tree.