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PoonLab / Kaphi

Kernel-embedded ABC-SMC for phylodynamic inference
GNU Affero General Public License v3.0
4 stars 2 forks source link

const.coalescent is producing trees with nonsense tip labels #23

Closed ArtPoon closed 7 years ago

ArtPoon commented 7 years ago

Encountered this while debugging issue #22 For example:

> write.tree(sim.tree)
[1] "((((((1.11022302462516e-16:0.02524922802,1.11022302462516e-16:0.02524922802):0.05033006789,1.11022302462516e-16:0.0755792959):0.05444047653,(1.11022302462516e-16:0.02979646736,1.11022302462516e-16:0.02979646736):0.1002233051):0.08255408061,((1.11022302462516e-16:0.04722236556,1.11022302462516e-16:0.04722236556):0.01307631053,1.11022302462516e-16:0.06029867609):0.152275177):0.2675979671,((((((1.11022302462516e-16:0.02267684476,1.11022302462516e-16:0.02267684476):0.03520747157,1.11022302462516e-16:0.05788431632):0.01945058017,1.11022302462516e-16:0.07733489649):0.0300051726,1.11022302462516e-16:0.1073400691):0.07328217883,1.11022302462516e-16:0.1806222479):0.1200019126,1.11022302462516e-16:0.3006241606):0.1795476596):2.64717087,(((1.11022302462516e-16:0.057328283,1.11022302462516e-16:0.057328283):0.02427477499,0:0.08160305799):0.1849555688,(1.11022302462516e-16:0.06503798585,0:0.06503798585):0.201520641):2.860784063);"
ArtPoon commented 7 years ago

No repro, closing