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PoonLab / Kaphi

Kernel-embedded ABC-SMC for phylodynamic inference
GNU Affero General Public License v3.0
4 stars 2 forks source link

Plan interface for Shiny app #68

Closed ArtPoon closed 7 years ago

ArtPoon commented 7 years ago

From our discussion, we may take a single-page, two-column format with inputs and forms on the left, and visual feedback on the right.
The page is structured into the following sections:

  1. input (text field for pasting Newick or upload a file) - right will display tree
  2. specify a model (two selects?)
  3. configure analysis (form) - might display prior distributions on right
  4. run - need feedback plots, e.g., mean kernel score over iterations
  5. outputs

User should be able to download a CSV with the particle values, and view summary statistics like mean, median, confidence interval associated with every model parameter.

ArtPoon commented 7 years ago

Question: should user be able to download plots? User can right-click PNG, but perhaps we can provide link to high-resolution (vector) PDF versions.