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PoonLab / MiCall-Lite

Pipeline for processing FASTQ data from an Illumina MiSeq for human RNA virus (HIV, hepatitis C virus) genotyping
GNU Affero General Public License v3.0
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replace gotoh with gotoh2 #1

Closed ArtPoon closed 6 years ago

ArtPoon commented 6 years ago

gotoh2 is more maintainable and should yield similar outputs

ArtPoon commented 6 years ago

current version of gotoh doesn't build for Python 3:

gotoh.cpp: In function ‘PyObject* initgotoh()’:
gotoh.cpp:738:55: error: ‘Py_InitModule’ was not declared in this scope
         (void) Py_InitModule("gotoh", AlignmentMethods);