User cannot specify custom JSON file

PoonLab / MiCall-Lite

Pipeline for processing FASTQ data from an Illumina MiSeq for human RNA virus (HIV, hepatitis C virus) genotyping

GNU Affero General Public License v3.0

4 stars 3 forks source link

Closed ArtPoon closed 4 years ago

ArtPoon commented 4 years ago

The following scripts;

prelim_map.py
remap.py
aln2counts.py employ the following line:
```
projects = project_config.ProjectConfig.loadDefault()
```
to load the default JSON file projects.json.

ArtPoon commented 4 years ago

Fixed by commit b9fdd20d5c93b35888d5e259743acffd2b33b36f