Remove of identical sequences may cause names to go out of sync

PoonLab / OpenRDP

An open-source re-implementation of the RDP4 recombination detection program

GNU General Public License v3.0

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Remove of identical sequences may cause names to go out of sync #47

Closed ArtPoon closed 1 year ago

ArtPoon commented 1 year ago

https://github.com/PoonLab/OpenRDP/blob/d5cb63962586120b65f22ba7d5d2345969e24517/openrdp/__init__.py#L137

This will cause aln to become a smaller list in the presence of identical sequences. However, seq_names is a list that stores the sequence labels from the input alignment, and is not modified.