search

PoonLab / OpenRDP

An open-source re-implementation of the RDP4 recombination detection program
GNU General Public License v3.0
45 stars 9 forks source link

Refining breakpoints with HMM #56

Open ArtPoon opened 1 year ago

ArtPoon commented 1 year ago

From Darren:

OpenRDP uses the breakpoint locations determined by the different detection methods to identify breakpoint sites but RDP uses a sequence triplet-based HMM method to refine the positions of breakpoint sites - also didn't see any code for that in OpenRDP the last time I checked.