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PoonLab / OpenRDP

An open-source re-implementation of the RDP4 recombination detection program
GNU General Public License v3.0
45 stars 9 forks source link

3Seq method not running on windows 11 #65

Closed SandeepThokala closed 10 months ago

SandeepThokala commented 1 year ago

Error message:

Starting 3Seq Analysis
  ERROR: Loading fail! The P-value table file may be corrupt.

Traceback (most recent call last):
  File ".\OpenRDP\bin\openrdp", line 44, in <module>
    results = scanner.run_scans(args.infile, args.ref)
  File "site-packages\openrdp-0.1.0-py3.10.egg\openrdp\__init__.py", line 219, in run_scans
    results.dict['threeseq'] = three_seq.execute()
  File "site-packages\openrdp-0.1.0-py3.10.egg\openrdp\threeseq.py", line 51, in execute
    ts_results = self.parse_output(out_path)
  File "site-packages\openrdp-0.1.0-py3.10.egg\openrdp\threeseq.py", line 65, in parse_output
    with open(out_path) as out_handle:
FileNotFoundError: [Errno 2] No such file or directory: 'AppData\\Local\\Temp\\tmpieigj94b.3s.rec.csv'

.3s.rec temp files are not being created

SandeepThokala commented 11 months ago

3Seq method is working without any issue in Jesry

ArtPoon commented 11 months ago

Seems like the binary is not compatible with Windows 11 then? I guess we will have to update the README to indicate that newer versions of Windows are not currently supported, and close for now.

ArtPoon commented 10 months ago

@SandeepThokala please update readme and close, thanks!