Iss64 - Githubissues

PoonLab / OpenRDP

An open-source re-implementation of the RDP4 recombination detection program

GNU General Public License v3.0

45 stars 9 forks source link

Closed SandeepThokala closed 9 months ago

ArtPoon commented 11 months ago

Waiting on expanding unit test coverage, see #67

pmagbor commented 9 months ago

@SandeepThokala Just a few minor errors I found when attempting to run it as a user:

Using OpenRDP as a Python module option with scanner requires ref_seq as an argument rather than it being optional as described in the README
Scanning triplet feature being printed to the console seems to fluctuate (e.g. fluctuating from 2 of 9 to 4 of 9 to 9 of 9 to 2 of 9 again)

SandeepThokala commented 9 months ago

Fixed OpenRDP as a Python module option with scanner requires ref_seq as an argument rather than it being optional as described in the README in the recent commit
Fluctuations in the output is caused by this multiprocessing block https://github.com/PoonLab/OpenRDP/blob/838eef2f0ef1699194c670f3f6f9e1ae3e2a64e2/openrdp/bootscan.py#L294-L297