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PoonLab / OpenRDP

An open-source re-implementation of the RDP4 recombination detection program
GNU General Public License v3.0
45 stars 9 forks source link

Installation Error #70

Closed paolij closed 5 months ago

paolij commented 7 months ago

Hello, I am tryin to install OpenRDP on my Mac and have an error message pasted below. Do you have any advice on how to navigate past this error message ? Thank you!

Searching for h5py>=3.8.0 Reading https://pypi.org/simple/h5py/ Download error on https://pypi.org/simple/h5py/: [SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: unable to get local issuer certificate (_ssl.c:1000) -- Some packages may not be found! Couldn't find index page for 'h5py' (maybe misspelled?) Scanning index of all packages (this may take a while) Reading https://pypi.org/simple/ Download error on https://pypi.org/simple/: [SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: unable to get local issuer certificate (_ssl.c:1000) -- Some packages may not be found! No local packages or working download links found for h5py>=3.8.0 error: Could not find suitable distribution for Requirement.parse('h5py>=3.8.0')

ArtPoon commented 7 months ago

Can you please provide the following information:

paolij commented 7 months ago

Hi Art, Thanks for your quick response, much appreciated!

  1. MacOS Ventura 13.6.1
  2. python 3.l2 3.sudo python3 setup.py install
ArtPoon commented 7 months ago

Hm. I just ran python setup.py install with an updated copy of OpenRDP (master branch) on my Mac, which happens to be running Ventura 13.5.2, and did not run into any issues:

Adding OpenRDP 0.1.0 to easy-install.pth file
Installing openrdp script to /Users/art/venv/bin

Installed /Users/art/venv/lib/python3.11/site-packages/OpenRDP-0.1.0-py3.11.egg
Processing dependencies for OpenRDP==0.1.0
Searching for h5py==3.10.0
Best match: h5py 3.10.0
Adding h5py 3.10.0 to easy-install.pth file
detected new path './OpenRDP-0.1.0-py3.11.egg'

Using /Users/art/venv/lib/python3.11/site-packages
Searching for numpy==1.26.0
Best match: numpy 1.26.0
Adding numpy 1.26.0 to easy-install.pth file
Installing f2py script to /Users/art/venv/bin

Using /Users/art/venv/lib/python3.11/site-packages
Searching for scipy==1.11.3
Best match: scipy 1.11.3
Adding scipy 1.11.3 to easy-install.pth file

Using /Users/art/venv/lib/python3.11/site-packages
Finished processing dependencies for OpenRDP==0.1.0
(venv) art@Wernstrom OpenRDP %

What version of OpenRDP are you trying to install? Can you try the latest commit on the master branch? What version of pip are you running?

paolij commented 7 months ago

Hi Art,

Thank you for this help! I follwed the readme instructions to clone the OpenRDP file using "git clone https://github.com/PoonLab/OpenRDP" so I believe that's the latest commit on the master branch?

This seems to be the issue: No local packages or working download links found for h5py>=3.8.0 error: Could not find suitable distribution for Requirement.parse('h5py>=3.8.0')

ArtPoon commented 5 months ago

Sorry for the delay - are you still having this issue? @GopiGugan pointed out that your original post indicates that you may have an issue with the SSL certificate on your computer.

ArtPoon commented 5 months ago

Given that you mentioned successfully installing the module in #71, I assume this is okay to close. @paolij can you please make a note of your fix if possible?