Open WilliamZekaiWang opened 3 weeks ago
This seems to be where p-values are being calculated for the RDP method: https://github.com/PoonLab/OpenRDP/blob/bb0200092d6245cfd11784a1e7fd081a59507de1/openrdp/rdp.py#L165-L175
On line 172, we should be taking the power out of $\log(p^n) = n\log(p)$ when calculating the binomial probability
Also need to look at how G
is being calculated as a possible issue
Using the dev branch where there is no P-value filter for breakpoints, as well as the
test_cfg.ini
gives the following results.I tinkered with this further, and this only occurs when we use this specific config file. The default one doesn't cause this, nor does providing a reference file
This occurs regardless if I use MPI or not