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PoonLab / Poplars

Open-source implementations of popular tools from Los Alamos National Laboratory HIV Database
GNU Affero General Public License v3.0
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Sequence locator: super() error #32

Closed ArtPoon closed 4 years ago

ArtPoon commented 4 years ago 
art@orolo:~/git/poplars/poplars$ python sequence_locator.py locate CAACAGCAAAGCAATTTGCTGAGGG hiv nucl
Traceback (most recent call last):
  File "sequence_locator.py", line 889, in <module>
    main()
  File "sequence_locator.py", line 858, in main
    ref_genome = Genome(nt_coords_handle, ref_nt_seq, aa_coords_handle, ref_aa_seq, reference_sequence)
  File "sequence_locator.py", line 307, in __init__
    self.ref_genome_regions = self.make_ref_regions(nt_coords, aa_coords, aa_seq)
  File "sequence_locator.py", line 323, in make_ref_regions
    seq_region = RefRegion(nt_line[0], self, nucl_coords)
  File "sequence_locator.py", line 89, in __init__
    super().__init__(region_name, genome, ncoords, pcoords)
TypeError: super() takes at least 1 argument (0 given)
kwade4 commented 4 years ago

Oops! I forgot that Python3 supports calling super() with no parameters, but Python2 doesn't.