Closed kwade4 closed 5 years ago
The program crashes with an OSError: [Errno 2] No such file or directory at this line: raw_output = subprocess.check_output(['mafft', '--quiet', handle.name])
OSError: [Errno 2] No such file or directory
raw_output = subprocess.check_output(['mafft', '--quiet', handle.name])
I am wondering if it is related to the path names for the tempfile and MAFFT.
Is mafft in your $PATH?
mafft
$PATH
ArtPoon
commented
5 years ago
The program crashes with an
OSError: [Errno 2] No such file or directoryat this line:raw_output = subprocess.check_output(['mafft', '--quiet', handle.name])I am wondering if it is related to the path names for the tempfile and MAFFT.