clmp app dropping connection with "Disconnected from the server"

ArtPoon commented 5 years ago

JavaScript console:

Failed to load resource: the server responded with a status of 404 (Not Found)
shiny-server-client.min.js:1 Thu Jun 20 2019 15:05:05 GMT-0400 (Eastern Daylight Time) [INF]: Connection opened. http://filogeneti.ca:3838/clmp/
shiny-server-client.min.js:1 Thu Jun 20 2019 15:05:05 GMT-0400 (Eastern Daylight Time) [DBG]: Open channel 0
shiny-server-client.min.js:1 The application unexpectedly exited.

Diagnostic information is private. Please ask your system admin for permission if you need to check the R logs.
shiny-server-client.min.js:1 Thu Jun 20 2019 15:05:06 GMT-0400 (Eastern Daylight Time) [INF]: Connection closed. Info: {"type":"close","code":4503,"reason":"The application unexpectedly exited","wasClean":true}
shiny-server-client.min.js:1 Thu Jun 20 2019 15:05:06 GMT-0400 (Eastern Daylight Time) [DBG]: SockJS connection closed
shiny-server-client.min.js:1 Thu Jun 20 2019 15:05:06 GMT-0400 (Eastern Daylight Time) [DBG]: Channel 0 is closed
shiny-server-client.min.js:1 Thu Jun 20 2019 15:05:06 GMT-0400 (Eastern Daylight Time) [DBG]: Removed channel 0, 0 left

ArtPoon commented 5 years ago

Server log (/var/log/shiny-server/clmp-*.log):


Attaching package: ‘shinyjs’

The following object is masked from ‘package:shiny’:

    runExample

The following objects are masked from ‘package:methods’:

    removeClass, show

Loading required package: ape
Loading required package: ggtree
Registered S3 method overwritten by 'treeio':
  method     from
  root.phylo ape 
ggtree v1.16.1  For help: https://yulab-smu.github.io/treedata-book/

If you use ggtree in published research, please cite the most appropriate paper(s):

- Guangchuang Yu, Tommy Tsan-Yuk Lam, Huachen Zhu, Yi Guan. Two methods for mapping and visualizing associated data on phylogeny using ggtree. Molecular Biology and Evolution 2018, accepted. doi: 10.1093/molbev/msy194- Guangchuang Yu, David Smith, Huachen Zhu, Yi Guan, Tommy Tsan-Yuk Lam. ggtree: an R package for visualization and annotation of phylogenetic trees with their covariates and other associated data. Methods in Ecology and Evolution 2017, 8(1):28-36, doi:10.1111/2041-210X.12628

Attaching package: ‘ggtree’

The following object is masked from ‘package:ape’:

    rotate

Listening on http://127.0.0.1:44061

ArtPoon commented 5 years ago

Got it by running R from cmd line:

> res <- clmp(structSIR)

FATAL ERROR: cmaes_ReadFromFile(): could not open 'cmaes_initials.par'
cmaes_t could not open file 'errcmaes.err'.
 *** CMA-ES ABORTED ***

PoonLab / clmp

clmp app dropping connection with "Disconnected from the server" #46