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PoonLab / clustuneR

Implementing clustering algorithms on genetic data and finding optimal parameters through the performance of predictive growth models.
GNU General Public License v3.0
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Write user guide, update README #20

Open liamxg opened 1 year ago

liamxg commented 1 year ago

I want to only use the genetic distance from inputted sequence alignments to get the cut-off values, is that possible? BTW, if construct trees, can I use other softwares, like fasttree, phyml, raxml?

ArtPoon commented 1 year ago

@liamxg - I'm in the middle of fixing the main branch, I'll try to update the examples as soon as I can ok?

ArtPoon commented 11 months ago

Previous title:

Could you please show an example of builds clusters from inputted sequence alignments, not phylogenetic trees, to determine the cut-off values, thanks

liamxg commented 11 months ago

Dear @ArtPoon,

Thank you, very glad to hear the news, can not wait for this.

ArtPoon commented 11 months ago

Updated README

liamxg commented 11 months ago

Dear @ArtPoon, wow, amazing.

ArtPoon commented 11 months ago

I still have to write vignettes with detailed instructions for each method

liamxg commented 11 months ago

Dear @ArtPoon, cool, can not wait for vignettes.