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PoonLab / covizu

Rapid analysis and visualization of coronavirus genome variation
https://filogeneti.ca/CoVizu/
MIT License
45 stars 20 forks source link

Fix recombinant filtering #480

Closed GopiGugan closed 1 year ago

GopiGugan commented 1 year ago
GopiGugan commented 1 year ago

Need to update the test data to fix the cypress tests

bonnielu commented 1 year ago

Some of the previous test files were specific to the test data files; I can update the tests to reflect the changes!

GopiGugan commented 1 year ago

Some of the previous test files were specific to the test data files; I can update the tests to reflect the changes!

Thanks Bonnie, no worries. I can just add in the raw_lineage field to the previous data set for now.

GopiGugan commented 1 year ago

Cypress tests pass locally now:

  (Run Finished)

       Spec                                              Tests  Passing  Failing  Pending  Skipped  
  ┌────────────────────────────────────────────────────────────────────────────────────────────────┐
  │ ✔  beadplot.spec.cy.js                      00:20       10       10        -        -        - │
  ├────────────────────────────────────────────────────────────────────────────────────────────────┤
  │ ✔  covizu.spec.cy.js                        00:31       14       14        -        -        - │
  ├────────────────────────────────────────────────────────────────────────────────────────────────┤
  │ ✔  utils.spec.cy.js                         00:01        4        4        -        -        - │
  └────────────────────────────────────────────────────────────────────────────────────────────────┘
    ✔  All specs passed!                        00:53       28       28        -        -        -
GopiGugan commented 1 year ago

Screenshot 2023-06-08 at 7 04 30 PM

Recombinants are being filtered correctly now