Xbbtree

[ArtPoon]

• 489

  • Separate lineages into main tree, XBB tree, and other recombinants groupings
  • Reconstruct two trees and display on front-end
  • Allow user to switch between displays with drop-down menu

• 496

[GopiGugan]

Need to add axbbtree.nwk to the test data folder for the Cypress tests

[GopiGugan]

• [x] Fix cypress tests
• [x] Add unit tests for the new "Display" dropdown
• [x] Run test on full dataset

[GopiGugan]

With these changes in batch.py, it would mean that XBB lineages would not appear in the epicov branch. Should these changes be propagated to the epicov branch?

[GopiGugan]

Checking the following:

• [x] Search
  • [x] Search by accession number
  • [x] Search by lineage
  • [x] Search by country
  • [x] Search by country (with date filter)
• [x] Tree filtering
• [x] Download Time-scaled tree (nwk)
• [x] Download Time-scaled tree (csv)
• [x] Download Beadplot (svg)
• [x] Download Beadplot (nwk)
• [x] Download mutation list (csv)
• [x] Beadplot cutoff slider
• [x] Expanding Beadplot
• [x] Translated pages
• [x] Changing the colour of the tree based on divergence, collection date, etc.
• [x] Left/Right arrow key to move between beads
• [x] Tooltips
• [x] Countries/Samples/Mutations tabs are populating the correct information
• [x] Build front-end database without issues