Iss485 - backend database

PoonLab / covizu

Rapid analysis and visualization of coronavirus genome variation

https://filogeneti.ca/CoVizu/

MIT License

45 stars 20 forks source link

Iss485 - backend database #501

Closed SandeepThokala closed 7 months ago

GopiGugan commented 8 months ago

Lets also add psycopg2 as a dependency in INSTALL.md
Add instructions on how to setup database locally

GopiGugan commented 7 months ago

Adding step to create database "gsaid_db" if it doesn't exist

GopiGugan commented 7 months ago

Should there be an option to run the pipeline without using the database?

ArtPoon commented 7 months ago

Should there be an option to run the pipeline without using the database?

Yes I prefer to keep old functionality around in case of an unanticipated use case, or we have to roll things back. Specifying some --option with action="store_true" would do the job.