HIVdb algorithm initialization code is in JSONWriter

PoonLab / sierra-local

Retrieve HIVdb algorithm as XML and apply locally to HIV sequences

GNU General Public License v3.0

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HIVdb algorithm initialization code is in JSONWriter #61

Open ArtPoon opened 5 years ago

ArtPoon commented 5 years ago

This means that calling algorithm = HIVdb() is not sufficient for a functional HIVdb object - this has to be followed up with a call to JSONWriter:

writer = JSONWriter(algorithm)

This isn't a good separation of classes.