PoonLab / sierra-local

Retrieve HIVdb algorithm as XML and apply locally to HIV sequences
GNU General Public License v3.0
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Test coverage improvement issue for `get_closest_subtype` function of `subtyper.py` #80

Closed SandeepThokala closed 1 year ago

SandeepThokala commented 1 year ago

https://github.com/PoonLab/sierra-local/blob/707db8e8b1ab51f89ea1a1c29a5baa96ed61c12e/sierralocal/subtyper.py#L123-L130

The function always stops at line 127 and rest of the lines (128 - 164) never get any coverage

https://github.com/PoonLab/sierra-local/blob/707db8e8b1ab51f89ea1a1c29a5baa96ed61c12e/sierralocal/subtyper.py#L152-L164

ArtPoon commented 1 year ago
ArtPoon commented 1 year ago

@SandeepThokala can you check whether this function has been deprecated in the hivdb version? If so we can just deactivate this test.

SandeepThokala commented 1 year ago

Deactivating the test