PoonLab / vindels

Developing an empirical model of sequence insertion and deletion in virus genomes
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Check whether Novitsky data is already included #65

Closed ArtPoon closed 5 years ago

jpalmer37 commented 5 years ago

I can say with confidence that Dr. Novitsky's data is not contained in our LANL derived data set.

To verify this, I checked every subtype C containing study in the search result for his name and found nothing. Also, our LANL search query of gp120 does not provide partial fragments of gp120, only those that start before the C1 region and end after C5 region. His sequences of V1C5 would not have qualified under the search.