error in generating plot ?

[deepakkarthik90]

Description of the bug

I have specified process.scratch = true.

Command used and terminal output

Caused by:
  Process `POPGEN48_SCALEPOPGEN:SCALEPOPGEN:CALC_1_MIN_IBS_DIST:PYTHON_PLOT_1_MIN_IBS_DIST (plot_1_min_ibs_distance)` terminated with an error exit status (1)

Command executed:

  if grep -qw null scalepopgen_ld_filtered_update_chrom_id_1_min_ibs.mdist.id;then
      python3 /home/kcgeb/kcdeepak/scale/scalepopgen/bin/make_ibs_dist_nj_tree.py -r null -i scalepopgen_ld_filtered_update_chrom_id_1_min_ibs.mdist -m scalepopgen_ld_filtered_update_chrom_id_1_min_ibs.mdist.id -c pop_sc_color.map -y ibs_nj.yml -o scalepopgen
  else
      python3 /home/kcgeb/kcdeepak/scale/scalepopgen/bin/make_ibs_dist_nj_tree.py -i scalepopgen_ld_filtered_update_chrom_id_1_min_ibs.mdist -m scalepopgen_ld_filtered_update_chrom_id_1_min_ibs.mdist.id -c pop_sc_color.map -y ibs_nj.yml -o scalepopgen
  fi

  cat /home/kcgeb/kcdeepak/scale/scalepopgen/assets/ibs_comments.txt *.html > scalepopgen_ibs_mqc.html

  cp .command.log calc_1_mins_ibs_dist.log

Command exit status:
  1

Command output:
  (empty)

Command error:
  cp: can't stat '.command.log': No such file or directory

Relevant files

No response

System information

No response

[BioInf2305]

Please provide the following information: 1). command and the parameters that you used to run the workflow; specifically, whether or not you used the outgroup to root the tree. 2). whether or not the html file, "scalepopgen_ibs_mqc.html", was generated.