PopicLab / cue

Deep learning framework for SV calling and genotyping
MIT License
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the difference among cue-synth-datasets/benchmarks/basic/cue/linked, long and short? #23

Open jingydz opened 1 year ago

jingydz commented 1 year ago

Hi, I have installed the cue software and tested the demo, it worked. Next, I want to detect SV in whole GRCh38 genome. In the first step, which "xxx.sorted.vcf.gz" file should I choose in my test/ground_truth? In this directory "cue-synth-datasets", there are so many files that I can not choose the best for me. Can you give me some advice? Thank you in advance!