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PopulationAndCommunityOntology / pco

An ontology about groups of interacting organisms such as populations and communities
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NewTerm: LTER mappings #15

Open ramonawalls opened 9 years ago

ramonawalls commented 9 years ago

Issue by GoogleCodeExporter Thursday Jun 11, 2015 at 23:48 GMT Originally opened as https://github.com/rlwalls2008/pco/issues/20

ENVO is doing a mapping to LTER vocabulary. Some of them belong in PCO. See 
https://github.com/EnvironmentOntology/envo/issues/135#issuecomment-88261287

  is_a LTER:674 ! population and community properties ***
   is_a LTER:115 ! community composition ***
   is_a LTER:166 ! diversity ***
    is_a LTER:542 ! species composition ***
    is_a LTER:543 ! species diversity ***
    is_a LTER:546 ! species richness ***
    is_a LTER:64 ! biodiversity ***
     is_a LTER:432 ! plant species composition ***
     is_a LTER:543 ! species diversity ***
     is_a LTER:546 ! species richness ***
   is_a LTER:468 ! respiration rates ***
   is_a LTER:554 ! standing crop ***
   is_a LTER:6 ! abundance ***
    is_a LTER:462 ! relative abundance ***
    is_a LTER:52 ! bacterial abundance ***
   is_a LTER:603 ! trophic structure ***

Original issue reported on code.google.com by rlwalls2...@gmail.com on 3 Apr 2015 at 12:03

ramonawalls commented 9 years ago

Comment by GoogleCodeExporter Thursday Jun 11, 2015 at 23:48 GMT


The BP subbranch of the process hierarchy is also a candidate for PCO. Although 
many labels look like GO terms, I think many of these are populations of 
processes. E.g. mereological sum of photosynthesis processes in an area of land 
over some time; LTER:mortality = mereological sum of GO:deaths. This could be 
seen as term inflation though. Depends how these are to be used.

 / LTER:655 ! processes
  is_a LTER:656 ! biological processes 
   is_a LTER:155 ! disease
   is_a LTER:186 ! evolution
    is_a LTER:14 ! adaptation
    is_a LTER:188 ! extinction
    is_a LTER:357 ! mutation
    is_a LTER:360 ! natural selection
    is_a LTER:540 ! speciation
   is_a LTER:298 ! life history
    is_a LTER:113 ! colonization
    is_a LTER:156 ! dispersal
     is_a LTER:495 ! seed dispersal
    is_a LTER:226 ! germination
    is_a LTER:236 ! growth
     is_a LTER:428 ! plant growth
     is_a LTER:597 ! tree growth
    is_a LTER:237 ! habitat selection
    is_a LTER:264 ! incubation
    is_a LTER:353 ! mortality
     is_a LTER:598 ! tree mortality
    is_a LTER:461 ! regeneration
    is_a LTER:465 ! reproduction
    is_a LTER:572 ! survival
   is_a LTER:305 ! litterfall
   is_a LTER:338 ! microbial activity
   is_a LTER:449 ! production
    is_a LTER:417 ! photosynthesis
    is_a LTER:428 ! plant growth
    is_a LTER:447 ! primary production
     is_a LTER:363 ! net primary production
      is_a LTER:36 ! annual net primary production
    is_a LTER:5 ! aboveground production
    is_a LTER:53 ! bacterial production
   is_a LTER:544 ! species interactions
    is_a LTER:120 ! competition
    is_a LTER:233 ! grazing
    is_a LTER:244 ! herbivory
    is_a LTER:401 ! parasitism
    is_a LTER:444 ! predation
    is_a LTER:575 ! symbiosis
    is_a LTER:74 ! browsing
   is_a LTER:686 ! succession
   is_a LTER:689 ! translocation
   is_a LTER:88 ! carbon cycling
    is_a LTER:467 ! respiration
    is_a LTER:87 ! carbon assimilation

Original comment by rlwalls2...@gmail.com on 3 Apr 2015 at 12:05

ramonawalls commented 9 years ago

Comment by GoogleCodeExporter Thursday Jun 11, 2015 at 23:48 GMT

See the original vocab at http://vocab.lternet.edu/

See also ENVO mappings at:
(Requires review)

    mapped: https://github.com/EnvironmentOntology/envo/blob/master/src/envo/mappings/lter-mapping.tsv

    unmapped: https://github.com/EnvironmentOntology/envo/blob/master/src/envo/mappings/lter-unmapped.tsv (2nd column shows the sub-root category)

Original comment by rlwalls2...@gmail.com on 3 Apr 2015 at 12:06