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PredictiveEcology / Biomass_speciesParameters

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Module code checks warnings #36

Open CeresBarros opened 11 months ago

CeresBarros commented 11 months ago

I've noticed a bunch of module code checks warnings related to Biomass_speciesParameters@development we should probably have a look at. It's possible not all are actually issues.

I'll do my best to adress them, but if others can get there before me that'd be great

D:/GitHub/LandR-tutorials/LandRDemo_coreVeg/modules/Biomass_speciesParameters/Biomass_speciesParameters.R
Biomass_speciesParameters: module code: studyAreaANPP is declared in metadata inputObjects, but no default(s) is provided in .inputObjects
Biomass_speciesParameters: module code: buildGrowthCurves : <anonymous>: local variable ‘matchingSpecies’ assigned but may not be used (D:/GitHub/LandR-tutorials/LandRDemo_coreVeg/modules/Biomass_speciesParameters/R/aNPPfunctions.R:164)
Biomass_speciesParameters: module code: buildGrowthCurves: local variable ‘speciesCompN’ assigned but may not be used (D:/GitHub/LandR-tutorials/LandRDemo_coreVeg/modules/Biomass_speciesParameters/R/aNPPfunctions.R:132)
Biomass_speciesParameters: module code: editSpeciesTraits: parameter ‘approach’ may not be used
Biomass_speciesParameters: module code: editSpeciesTraits: parameter ‘inflationFactorKey’ may not be used
Biomass_speciesParameters: module code: editSpeciesTraits: parameter ‘speciesEquiv’ may not be used
Biomass_speciesParameters: module code: editSpeciesTraits: parameter ‘sppCol’ may not be used
Biomass_speciesParameters: module code: makeGAMMdata: local variable ‘A’ assigned but may not be used
Biomass_speciesParameters: module code: makeGAMMdata: local variable ‘k’ assigned but may not be used
Biomass_speciesParameters: module code: makeGAMMdata: local variable ‘localEnv’ assigned but may not be used (D:/GitHub/LandR-tutorials/LandRDemo_coreVeg/modules/Biomass_speciesParameters/R/aNPPfunctions.R:423)
Biomass_speciesParameters: module code: makeGAMMdata: local variable ‘model’ assigned but may not be used
Biomass_speciesParameters: module code: makeGAMMdata: local variable ‘p’ assigned but may not be used
Biomass_speciesParameters: module code: makeGAMMdata: parameter ‘speciesEquiv’ may not be used
Biomass_speciesParameters: module code: makeGAMMdata: parameter ‘sppCol’ may not be used
Biomass_speciesParameters: module code: modifySpeciesTable: local variable ‘llAll’ assigned but may not be used (D:/GitHub/LandR-tutorials/LandRDemo_coreVeg/modules/Biomass_speciesParameters/R/aNPPfunctions.R:241)
Biomass_speciesParameters: outputObjects: Weights is assigned to sim inside makeGAMMdata, but is not declared in metadata outputObjects
Biomass_speciesParameters: inputObjects: speciesTemp is used from sim inside dataForFit, but is not declared in metadata inputObjects
Biomass_speciesParameters: inputObjects: Par$sppEquivCol is used from sim inside Init, but is not declared in metadata inputObjects
Biomass_speciesParameters: inputObjects: speciesTemp, standAge, biomass are used from sim inside makeGAMMdata, but are not declared in metadata inputObjects
Biomass_speciesParameters: inputObjects: Boreal is used from sim inside .inputObjects, but is not declared in metadata inputObjects