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Prefect is a workflow orchestration framework for building resilient data pipelines in Python.
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backports.zoneinfo not supported beyond Python 3.9 #9943

Closed wendytang closed 1 year ago

wendytang commented 1 year ago

First check

Bug summary

Hi team,

Prefect currently has a dependency on dateparser which depends on tzdata which depends on backports.zoneinfo. However, according to backports.zoneinfo documentation:

Support for backports.zoneinfo in Python 3.9+ is currently minimal, since it is expected that you would use the standard library zoneinfo module instead.

I've been running into this error trying to import backports.zoneinfo, so just wanted to flag here, if there's any way to move off of dateparser and hence backports.zoneinfo, it would be much appreciated.

Reproduction

When encountering this error, the base image is using Ubuntu 20.04

FROM public.ecr.aws/lts/ubuntu:20.04_stable

Error

CalledProcessError
  Command '['/builds/default-i-0c87c589b05e37c77-2/cash/cash-ml-prefect2/cash_ml_prefect2/examples/example_snowflake_flow/.venv/bin/python', '-m', 'pip', 'install', '--use-pep517', '--disable-pip-version-check', '--isolated', '--no-input', '--prefix', '/builds/default-i-0c87c589b05e37c77-2/cash/cash-ml-prefect2/cash_ml_prefect2/examples/example_snowflake_flow/.venv', '--no-deps', '/root/.cache/pypoetry/artifacts/b5/cb/c3/0aa492ca226550c3523885f024ff5a2e45609ee25cfea117fa2becfdb2/backports.zoneinfo-0.2.1.tar.gz']' returned non-zero exit status 1.
  at ~/.cache/hermit/pkg/python3-3.9.5/install/lib/python3.9/subprocess.py:528 in run
       524│             # We don't call process.wait() as .__exit__ does that for us.
       525│             raise
       526│         retcode = process.poll()
       527│         if check and retcode:
    →  528│             raise CalledProcessError(retcode, process.args,
       529│                                      output=stdout, stderr=stderr)
       530│     return CompletedProcess(process.args, retcode, stdout, stderr)
       531│
       532│
The following error occurred when trying to handle this error:
  EnvCommandError
  Command ['/builds/default-i-0c87c589b05e37c77-2/cash/cash-ml-prefect2/cash_ml_prefect2/examples/example_snowflake_flow/.venv/bin/python', '-m', 'pip', 'install', '--use-pep517', '--disable-pip-version-check', '--isolated', '--no-input', '--prefix', '/builds/default-i-0c87c589b05e37c77-2/cash/cash-ml-prefect2/cash_ml_prefect2/examples/example_snowflake_flow/.venv', '--no-deps', '/root/.cache/pypoetry/artifacts/b5/cb/c3/0aa492ca226550c3523885f024ff5a2e45609ee25cfea117fa2becfdb2/backports.zoneinfo-0.2.1.tar.gz'] errored with the following return code 1, and output:
  Processing /root/.cache/pypoetry/artifacts/b5/cb/c3/0aa492ca226550c3523885f024ff5a2e45609ee25cfea117fa2becfdb2/backports.zoneinfo-0.2.1.tar.gz
    Installing build dependencies: started
    Installing build dependencies: finished with status 'done'
    Getting requirements to build wheel: started
    Getting requirements to build wheel: finished with status 'done'
    Preparing metadata (pyproject.toml): started
    Preparing metadata (pyproject.toml): finished with status 'done'
  Building wheels for collected packages: backports.zoneinfo
    Building wheel for backports.zoneinfo (pyproject.toml): started
    Building wheel for backports.zoneinfo (pyproject.toml): finished with status 'error'
    error: subprocess-exited-with-error
    × Building wheel for backports.zoneinfo (pyproject.toml) did not run successfully.
    │ exit code: 1
    ╰─> [49 lines of output]
        /tmp/pip-build-env-u114q9a2/overlay/lib/python3.9/site-packages/setuptools/config/setupcfg.py:293: _DeprecatedConfig: Deprecated config in `setup.cfg`
        !!
                ********************************************************************************
                The license_file parameter is deprecated, use license_files instead.
                By 2023-Oct-30, you need to update your project and remove deprecated calls
                or your builds will no longer be supported.
                See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details.
                ********************************************************************************
        !!
          parsed = self.parsers.get(option_name, lambda x: x)(value)
        running bdist_wheel
        running build
        running build_py
        creating build
        creating build/lib.linux-x86_64-cpython-39
        creating build/lib.linux-x86_64-cpython-39/backports
        copying src/backports/__init__.py -> build/lib.linux-x86_64-cpython-39/backports
        creating build/lib.linux-x86_64-cpython-39/backports/zoneinfo
        copying src/backports/zoneinfo/_version.py -> build/lib.linux-x86_64-cpython-39/backports/zoneinfo
        copying src/backports/zoneinfo/_zoneinfo.py -> build/lib.linux-x86_64-cpython-39/backports/zoneinfo
        copying src/backports/zoneinfo/_common.py -> build/lib.linux-x86_64-cpython-39/backports/zoneinfo
        copying src/backports/zoneinfo/_tzpath.py -> build/lib.linux-x86_64-cpython-39/backports/zoneinfo
        copying src/backports/zoneinfo/__init__.py -> build/lib.linux-x86_64-cpython-39/backports/zoneinfo
        running egg_info
        writing src/backports.zoneinfo.egg-info/PKG-INFO
        writing dependency_links to src/backports.zoneinfo.egg-info/dependency_links.txt
        writing requirements to src/backports.zoneinfo.egg-info/requires.txt
        writing top-level names to src/backports.zoneinfo.egg-info/top_level.txt
        reading manifest file 'src/backports.zoneinfo.egg-info/SOURCES.txt'
        reading manifest template 'MANIFEST.in'
        warning: no files found matching '*.png' under directory 'docs'
        warning: no files found matching '*.svg' under directory 'docs'
        no previously-included directories found matching 'docs/_build'
        no previously-included directories found matching 'docs/_output'
        adding license file 'LICENSE'
        adding license file 'licenses/LICENSE_APACHE'
        writing manifest file 'src/backports.zoneinfo.egg-info/SOURCES.txt'
        copying src/backports/zoneinfo/__init__.pyi -> build/lib.linux-x86_64-cpython-39/backports/zoneinfo
        copying src/backports/zoneinfo/py.typed -> build/lib.linux-x86_64-cpython-39/backports/zoneinfo
        running build_ext
        building 'backports.zoneinfo._czoneinfo' extension
        creating build/temp.linux-x86_64-cpython-39
        creating build/temp.linux-x86_64-cpython-39/lib
        clang -pthread -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -g -fwrapv -O3 -Wall -fPIC -I/tools/deps/include -I/tools/deps/include/ncursesw -fPIC -I/builds/default-i-0c87c589b05e37c77-2/cash/cash-ml-prefect2/cash_ml_prefect2/examples/example_snowflake_flow/.venv/include -I/root/.cache/hermit/pkg/python3-3.9.5/install/include/python3.9 -c lib/zoneinfo_module.c -o build/temp.linux-x86_64-cpython-39/lib/zoneinfo_module.o -std=c99
        error: command 'clang' failed: No such file or directory
        [end of output]
    note: This error originates from a subprocess, and is likely not a problem with pip.
    ERROR: Failed building wheel for backports.zoneinfo
  Failed to build backports.zoneinfo
  ERROR: Could not build wheels for backports.zoneinfo, which is required to install pyproject.toml-based projects
  at /builds/default-i-0c87c589b05e37c77-2/cash/cash-ml-prefect2/.hermit/python/lib/python3.9/site-packages/poetry/utils/env.py:1540 in _run
      1536│                 output = subprocess.check_output(
      1537│                     command, stderr=subprocess.STDOUT, env=env, **kwargs
      1538│                 )
      1539│         except CalledProcessError as e:
    → 1540│             raise EnvCommandError(e, input=input_)
      1541│
      1542│         return decode(output)
      1543│
      1544│     def execute(self, bin: str, *args: str, **kwargs: Any) -> int:
The following error occurred when trying to handle this error:
  PoetryException
  Failed to install /root/.cache/pypoetry/artifacts/b5/cb/c3/0aa492ca226550c3523885f024ff5a2e45609ee25cfea117fa2becfdb2/backports.zoneinfo-0.2.1.tar.gz
  at /builds/default-i-0c87c589b05e37c77-2/cash/cash-ml-prefect2/.hermit/python/lib/python3.9/site-packages/poetry/utils/pip.py:58 in pip_install
       54│
       55│     try:
       56│         return environment.run_pip(*args)
       57│     except EnvCommandError as e:
    →  58│         raise PoetryException(f"Failed to install {path.as_posix()}") from e
       59│
🚨 Error: The command exited with status 1

Versions

Prefect 2.10.13

Additional context

No response

desertaxle commented 1 year ago

@wendytang can you please share a Python snippet where you see this error along with the Python version that you're using so that we can replicate this error?

wendytang commented 1 year ago

Hi @desertaxle, I'm using python 3.9.5, and this error occurs at poetry install - I've attached the backports-zoneinfo portion of the lock file:

[[package]]
name = "backports-zoneinfo"
version = "0.2.1"
description = "Backport of the standard library zoneinfo module"
category = "main"
optional = false
python-versions = ">=3.6"
files = [
    {file = "backports.zoneinfo-0.2.1-cp36-cp36m-macosx_10_14_x86_64.whl", hash = "sha256:da6013fd84a690242c310d77ddb8441a559e9cb3d3d59ebac9aca1a57b2e18bc"},
    {file = "backports.zoneinfo-0.2.1-cp36-cp36m-manylinux1_i686.whl", hash = "sha256:89a48c0d158a3cc3f654da4c2de1ceba85263fafb861b98b59040a5086259722"},
    {file = "backports.zoneinfo-0.2.1-cp36-cp36m-manylinux1_x86_64.whl", hash = "sha256:1c5742112073a563c81f786e77514969acb58649bcdf6cdf0b4ed31a348d4546"},
    {file = "backports.zoneinfo-0.2.1-cp36-cp36m-win32.whl", hash = "sha256:e8236383a20872c0cdf5a62b554b27538db7fa1bbec52429d8d106effbaeca08"},
    {file = "backports.zoneinfo-0.2.1-cp36-cp36m-win_amd64.whl", hash = "sha256:8439c030a11780786a2002261569bdf362264f605dfa4d65090b64b05c9f79a7"},
    {file = "backports.zoneinfo-0.2.1-cp37-cp37m-macosx_10_14_x86_64.whl", hash = "sha256:f04e857b59d9d1ccc39ce2da1021d196e47234873820cbeaad210724b1ee28ac"},
    {file = "backports.zoneinfo-0.2.1-cp37-cp37m-manylinux1_i686.whl", hash = "sha256:17746bd546106fa389c51dbea67c8b7c8f0d14b5526a579ca6ccf5ed72c526cf"},
    {file = "backports.zoneinfo-0.2.1-cp37-cp37m-manylinux1_x86_64.whl", hash = "sha256:5c144945a7752ca544b4b78c8c41544cdfaf9786f25fe5ffb10e838e19a27570"},
    {file = "backports.zoneinfo-0.2.1-cp37-cp37m-win32.whl", hash = "sha256:e55b384612d93be96506932a786bbcde5a2db7a9e6a4bb4bffe8b733f5b9036b"},
    {file = "backports.zoneinfo-0.2.1-cp37-cp37m-win_amd64.whl", hash = "sha256:a76b38c52400b762e48131494ba26be363491ac4f9a04c1b7e92483d169f6582"},
    {file = "backports.zoneinfo-0.2.1-cp38-cp38-macosx_10_14_x86_64.whl", hash = "sha256:8961c0f32cd0336fb8e8ead11a1f8cd99ec07145ec2931122faaac1c8f7fd987"},
    {file = "backports.zoneinfo-0.2.1-cp38-cp38-manylinux1_i686.whl", hash = "sha256:e81b76cace8eda1fca50e345242ba977f9be6ae3945af8d46326d776b4cf78d1"},
    {file = "backports.zoneinfo-0.2.1-cp38-cp38-manylinux1_x86_64.whl", hash = "sha256:7b0a64cda4145548fed9efc10322770f929b944ce5cee6c0dfe0c87bf4c0c8c9"},
    {file = "backports.zoneinfo-0.2.1-cp38-cp38-win32.whl", hash = "sha256:1b13e654a55cd45672cb54ed12148cd33628f672548f373963b0bff67b217328"},
    {file = "backports.zoneinfo-0.2.1-cp38-cp38-win_amd64.whl", hash = "sha256:4a0f800587060bf8880f954dbef70de6c11bbe59c673c3d818921f042f9954a6"},
    {file = "backports.zoneinfo-0.2.1.tar.gz", hash = "sha256:fadbfe37f74051d024037f223b8e001611eac868b5c5b06144ef4d8b799862f2"},
]

[package.extras]
tzdata = ["tzdata"]

Any pyproject.toml file with Prefect as a dependency. 

[tool.poetry]
name = "example_flow"
version = "0.1.0"
description = "Demonstrates a flow"
authors = ["Wendy Tang <wendytang@squareup.com>"]

[tool.poetry.dependencies]
python = ">=3.8,<3.11"
prefect = ">=2.10.0"
jawnsy commented 1 year ago

Hey there!

I cannot seem to reproduce this - can you provide any additional detail that might help us figure out what's happening here?

$ conda --version
conda 22.9.0

$ python --version
Python 3.9.16

$ poetry --version
Poetry (version 1.5.1)

$ poetry install
Installing dependencies from lock file

No dependencies to install or update

I ran poetry init and created a simple placeholder project -- this is the pyproject.toml that it gave me:

[tool.poetry]
name = "prefect9943"
version = "0.1.0"
description = ""
authors = ["Jonathan Yu <jonathan@prefect.io>"]
readme = "README.md"

[tool.poetry.dependencies]
python = "^3.9"
prefect = "^2.10.17"

[build-system]
requires = ["poetry-core"]
build-backend = "poetry.core.masonry.api"
Here's my full poetry.lock file ```toml # This file is automatically @generated by Poetry 1.5.1 and should not be changed by hand. [[package]] name = "aiosqlite" version = "0.19.0" description = "asyncio bridge to the standard sqlite3 module" optional = false python-versions = ">=3.7" files = [ {file = "aiosqlite-0.19.0-py3-none-any.whl", hash = "sha256:edba222e03453e094a3ce605db1b970c4b3376264e56f32e2a4959f948d66a96"}, {file = "aiosqlite-0.19.0.tar.gz", hash = "sha256:95ee77b91c8d2808bd08a59fbebf66270e9090c3d92ffbf260dc0db0b979577d"}, ] [package.extras] dev = ["aiounittest (==1.4.1)", "attribution (==1.6.2)", "black (==23.3.0)", "coverage[toml] (==7.2.3)", "flake8 (==5.0.4)", "flake8-bugbear (==23.3.12)", "flit (==3.7.1)", "mypy (==1.2.0)", "ufmt (==2.1.0)", "usort (==1.0.6)"] docs = ["sphinx (==6.1.3)", "sphinx-mdinclude (==0.5.3)"] [[package]] name = "alembic" version = "1.11.1" description = "A database migration tool for SQLAlchemy." optional = false python-versions = ">=3.7" files = [ {file = "alembic-1.11.1-py3-none-any.whl", hash = "sha256:dc871798a601fab38332e38d6ddb38d5e734f60034baeb8e2db5b642fccd8ab8"}, {file = "alembic-1.11.1.tar.gz", hash = "sha256:6a810a6b012c88b33458fceb869aef09ac75d6ace5291915ba7fae44de372c01"}, ] [package.dependencies] Mako = "*" SQLAlchemy = ">=1.3.0" typing-extensions = ">=4" [package.extras] tz = ["python-dateutil"] [[package]] name = "anyio" version = "3.7.0" description = "High level compatibility layer for multiple asynchronous event loop implementations" optional = false python-versions = ">=3.7" files = [ {file = "anyio-3.7.0-py3-none-any.whl", hash = "sha256:eddca883c4175f14df8aedce21054bfca3adb70ffe76a9f607aef9d7fa2ea7f0"}, {file = "anyio-3.7.0.tar.gz", hash = "sha256:275d9973793619a5374e1c89a4f4ad3f4b0a5510a2b5b939444bee8f4c4d37ce"}, ] [package.dependencies] exceptiongroup = {version = "*", markers = "python_version < \"3.11\""} idna = ">=2.8" sniffio = ">=1.1" [package.extras] doc = ["Sphinx (>=6.1.0)", "packaging", "sphinx-autodoc-typehints (>=1.2.0)", "sphinx-rtd-theme", "sphinxcontrib-jquery"] test = ["anyio[trio]", "coverage[toml] (>=4.5)", "hypothesis (>=4.0)", "mock (>=4)", "psutil (>=5.9)", "pytest (>=7.0)", "pytest-mock (>=3.6.1)", "trustme", "uvloop (>=0.17)"] trio = ["trio (<0.22)"] [[package]] name = "apprise" version = "1.4.0" description = "Push Notifications that work with just about every platform!" optional = false python-versions = ">=3.6" files = [ {file = "apprise-1.4.0-py2.py3-none-any.whl", hash = "sha256:f2fb0d152a5acfef9074abf1b1cfe8cca72a161615b3046fa1a9273e4c384b68"}, {file = "apprise-1.4.0.tar.gz", hash = "sha256:e3150534854dac53d4f07838d8cbfb22ce0d45d42eba05f96d66c4f4843cd55a"}, ] [package.dependencies] certifi = "*" click = ">=5.0" markdown = "*" PyYAML = "*" requests = "*" requests-oauthlib = "*" [[package]] name = "asgi-lifespan" version = "2.1.0" description = "Programmatic startup/shutdown of ASGI apps." optional = false python-versions = ">=3.7" files = [ {file = "asgi-lifespan-2.1.0.tar.gz", hash = "sha256:5e2effaf0bfe39829cf2d64e7ecc47c7d86d676a6599f7afba378c31f5e3a308"}, {file = "asgi_lifespan-2.1.0-py3-none-any.whl", hash = "sha256:ed840706680e28428c01e14afb3875d7d76d3206f3d5b2f2294e059b5c23804f"}, ] [package.dependencies] sniffio = "*" [[package]] name = "asyncpg" version = "0.27.0" description = "An asyncio PostgreSQL driver" optional = false python-versions = ">=3.7.0" files = [ {file = "asyncpg-0.27.0-cp310-cp310-macosx_10_9_x86_64.whl", hash = "sha256:fca608d199ffed4903dce1bcd97ad0fe8260f405c1c225bdf0002709132171c2"}, {file = "asyncpg-0.27.0-cp310-cp310-macosx_11_0_arm64.whl", hash = "sha256:20b596d8d074f6f695c13ffb8646d0b6bb1ab570ba7b0cfd349b921ff03cfc1e"}, {file = "asyncpg-0.27.0-cp310-cp310-manylinux_2_17_aarch64.manylinux2014_aarch64.manylinux_2_28_aarch64.whl", hash = "sha256:7a6206210c869ebd3f4eb9e89bea132aefb56ff3d1b7dd7e26b102b17e27bbb1"}, {file = "asyncpg-0.27.0-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_28_x86_64.whl", hash = "sha256:a7a94c03386bb95456b12c66026b3a87d1b965f0f1e5733c36e7229f8f137747"}, {file = "asyncpg-0.27.0-cp310-cp310-musllinux_1_1_aarch64.whl", hash = "sha256:bfc3980b4ba6f97138b04f0d32e8af21d6c9fa1f8e6e140c07d15690a0a99279"}, {file = "asyncpg-0.27.0-cp310-cp310-musllinux_1_1_x86_64.whl", hash = "sha256:9654085f2b22f66952124de13a8071b54453ff972c25c59b5ce1173a4283ffd9"}, {file = "asyncpg-0.27.0-cp310-cp310-win32.whl", hash = "sha256:879c29a75969eb2722f94443752f4720d560d1e748474de54ae8dd230bc4956b"}, {file = "asyncpg-0.27.0-cp310-cp310-win_amd64.whl", hash = "sha256:ab0f21c4818d46a60ca789ebc92327d6d874d3b7ccff3963f7af0a21dc6cff52"}, {file = "asyncpg-0.27.0-cp311-cp311-macosx_10_9_x86_64.whl", hash = "sha256:18f77e8e71e826ba2d0c3ba6764930776719ae2b225ca07e014590545928b576"}, {file = "asyncpg-0.27.0-cp311-cp311-macosx_11_0_arm64.whl", hash = "sha256:c2232d4625c558f2aa001942cac1d7952aa9f0dbfc212f63bc754277769e1ef2"}, {file = "asyncpg-0.27.0-cp311-cp311-manylinux_2_17_aarch64.manylinux2014_aarch64.manylinux_2_28_aarch64.whl", hash = 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"websockets-11.0.3-pp39-pypy39_pp73-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:1d5023a4b6a5b183dc838808087033ec5df77580485fc533e7dab2567851b0a4"}, {file = "websockets-11.0.3-pp39-pypy39_pp73-win_amd64.whl", hash = "sha256:ed058398f55163a79bb9f06a90ef9ccc063b204bb346c4de78efc5d15abfe602"}, {file = "websockets-11.0.3-py3-none-any.whl", hash = "sha256:6681ba9e7f8f3b19440921e99efbb40fc89f26cd71bf539e45d8c8a25c976dc6"}, {file = "websockets-11.0.3.tar.gz", hash = "sha256:88fc51d9a26b10fc331be344f1781224a375b78488fc343620184e95a4b27016"}, ] [[package]] name = "zipp" version = "3.15.0" description = "Backport of pathlib-compatible object wrapper for zip files" optional = false python-versions = ">=3.7" files = [ {file = "zipp-3.15.0-py3-none-any.whl", hash = "sha256:48904fc76a60e542af151aded95726c1a5c34ed43ab4134b597665c86d7ad556"}, {file = "zipp-3.15.0.tar.gz", hash = "sha256:112929ad649da941c23de50f356a2b5570c954b65150642bccdd66bf194d224b"}, ] [package.extras] docs = ["furo", "jaraco.packaging (>=9)", "jaraco.tidelift (>=1.4)", "rst.linker (>=1.9)", "sphinx (>=3.5)", "sphinx-lint"] testing = ["big-O", "flake8 (<5)", "jaraco.functools", "jaraco.itertools", "more-itertools", "pytest (>=6)", "pytest-black (>=0.3.7)", "pytest-checkdocs (>=2.4)", "pytest-cov", "pytest-enabler (>=1.3)", "pytest-flake8", "pytest-mypy (>=0.9.1)"] [metadata] lock-version = "2.0" python-versions = "^3.9" content-hash = "db6c57109461048f8b5d14ecba0ea7b2d326062bef8436c6c3832ebca1a4b9c2" ```

I don't know dateparser well enough to know whether a migration would be straightforward, though we only have a handful of references to it, so it certainly seems practical. I've just been unable to confirm the original issue as reported, and I don't know if there's some other compatibility issue introduced by Ubuntu.

jawnsy commented 1 year ago

Looking at your report more closely, the problem seems to be that Python is falling back to compiling the package from source instead of installing the wheel: 

        clang -pthread -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -g -fwrapv -O3 -Wall -fPIC -I/tools/deps/include -I/tools/deps/include/ncursesw -fPIC -I/builds/default-i-0c87c589b05e37c77-2/cash/cash-ml-prefect2/cash_ml_prefect2/examples/example_snowflake_flow/.venv/include -I/root/.cache/hermit/pkg/python3-3.9.5/install/include/python3.9 -c lib/zoneinfo_module.c -o build/temp.linux-x86_64-cpython-39/lib/zoneinfo_module.o -std=c99
        error: command 'clang' failed: No such file or directory

I think you can resolve this by installing build-essentials or clang packages using apt, but I'm not sure why the published wheels are insufficient here 🤔

jawnsy commented 1 year ago

I also tried the supplied image and everything seemed to work for me (I've abbreviated this output to remove some output):

 $ podman run --rm -it public.ecr.aws/lts/ubuntu:20.04_stable
Trying to pull public.ecr.aws/lts/ubuntu:20.04_stable...
Getting image source signatures
Copying blob sha256:fd7ea62b7af53fe93cb837560acd7903ee12e26127affb518c2b9efc6500d503
Copying config sha256:bf6a7b6c94869fe72f4c96fd84e37eebad67cc4d521b4cfdb9434d498925a49a
Writing manifest to image destination
Storing signatures

root@1092d61079ff:/# apt update

root@1092d61079ff:/# apt install python3 python3-pip python3.9

root@1092d61079ff:/# python3.9 -m pip install dateparser
Collecting dateparser
  Downloading dateparser-1.1.8-py2.py3-none-any.whl (293 kB)
     |████████████████████████████████| 293 kB 2.4 MB/s 
Collecting tzlocal
  Downloading tzlocal-5.0.1-py3-none-any.whl (20 kB)
Collecting regex!=2019.02.19,!=2021.8.27
  Downloading regex-2023.6.3-cp39-cp39-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (768 kB)
     |████████████████████████████████| 768 kB 7.2 MB/s 
Collecting python-dateutil
  Downloading python_dateutil-2.8.2-py2.py3-none-any.whl (247 kB)
     |████████████████████████████████| 247 kB 13.3 MB/s 
Collecting pytz
  Downloading pytz-2023.3-py2.py3-none-any.whl (502 kB)
     |████████████████████████████████| 502 kB 13.3 MB/s 
Collecting six>=1.5
  Downloading six-1.16.0-py2.py3-none-any.whl (11 kB)
Installing collected packages: tzlocal, regex, six, python-dateutil, pytz, dateparser
Successfully installed dateparser-1.1.8 python-dateutil-2.8.2 pytz-2023.3 regex-2023.6.3 six-1.16.0 tzlocal-5.0.1
wendytang commented 1 year ago

Hey @jawnsy - we communicated offline earlier regarding the fix. Would you mind summarizing your findings here for my understanding - why we need the dev versions of python3?

RUN apt-get -qq install -y --no-install-recommends build-essential python3-dev python3.9-dev
jawnsy commented 1 year ago

In this instance, the problem is that installing dateparser requires backports.zoneinfo, and for some reason, there were no precompiled wheels available.

When installing Python with apt-get --no-install-recommends, the build toolchain and Python development headers will be missing from the system, resulting in a failure to build the wheel. The build-essential virtual package includes the default build toolchain on Debian-based systems . The python3-dev and python3.9-dev packages include files used for building/compiling C language programs that integrate with Python.

Most importantly, the build-essential package depends on libc-dev (C Library headers), gcc, g++, make - this is a minimal compiler toolchain used to build C-language programs:

# apt show build-essential
Package: build-essential
Version: 12.8ubuntu1.1
Priority: optional
Build-Essential: yes
Section: devel
Origin: Ubuntu
Maintainer: Ubuntu Developers <ubuntu-devel-discuss@lists.ubuntu.com>
Original-Maintainer: Matthias Klose <doko@debian.org>
Bugs: https://bugs.launchpad.net/ubuntu/+filebug
Installed-Size: 21.5 kB
Depends: libc6-dev | libc-dev, gcc (>= 4:9.2), g++ (>= 4:9.2), make, dpkg-dev (>= 1.17.11)
Task: ubuntu-mate-core, ubuntu-mate-desktop
Download-Size: 4664 B
APT-Sources: http://ports.ubuntu.com/ubuntu-ports focal-updates/main arm64 Packages
Description: Informational list of build-essential packages

The python-dev headers include Python.h, which is part of the C interface to CPython. This is used by any applications or libraries that write C code that need to work with Python, such as Python libraries implemented in C, or when embedding a Python runtime in a C program (i.e. this supports cross-language access of Python-to-C or C-to-Python).

To demonstrate the problem and solution, I've prepared the following Dockerfile:

FROM public.ecr.aws/lts/ubuntu:20.04_stable

RUN apt-get -qq update
RUN apt-get -qq install -y --no-install-recommends python3.9 python3-pip
# these dependencies are necessary to build wheels (e.g. backports.zoneinfo)
RUN apt-get -qq install -y --no-install-recommends build-essential python3-dev python3.9-dev
RUN python3.9 -m pip -q install prefect

If you do not install build-essential, python3-dev, python3.9-dev, then pip will not be able to compile Python libraries with a C language portion. This is okay if your system can use precompiled binaries (wheels), but for whatever reason, that does not seem to be the case here - it may have to do with an incompatibility with this base image and available wheels published by the maintainers of backports.zoneinfo.

This results in an error similar to the one you shared in the "Error" section of your issue:

        clang -pthread -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -g -fwrapv -O3 -Wall -fPIC -I/tools/deps/include -I/tools/deps/include/ncursesw -fPIC -I/builds/default-i-0c87c589b05e37c77-2/cash/cash-ml-prefect2/cash_ml_prefect2/examples/example_snowflake_flow/.venv/include -I/root/.cache/hermit/pkg/python3-3.9.5/install/include/python3.9 -c lib/zoneinfo_module.c -o build/temp.linux-x86_64-cpython-39/lib/zoneinfo_module.o -std=c99
        error: command 'clang' failed: No such file or directory
        [end of output]
    note: This error originates from a subprocess, and is likely not a problem with pip.
    ERROR: Failed building wheel for backports.zoneinfo
  Failed to build backports.zoneinfo
  ERROR: Could not build wheels for backports.zoneinfo, which is required to install pyproject.toml-based projects

This is trying to compile an extension (zoneinfo_module.c) but there are no system compilers installed (presumably the Python build toolchain looks for either gcc or clang), which results in an error message and thus a failure to build the package.

If you add a compiler but do not have python3-dev, then you'll get an error similar to the following:

Building wheels for collected packages: backports.zoneinfo
  Building wheel for backports.zoneinfo (PEP 517) ... error
  ERROR: Command errored out with exit status 1:
   command: /usr/bin/python3.9 /tmp/tmpmuocyhk0_in_process.py build_wheel /tmp/tmp10jkrvjc
       cwd: /tmp/pip-install-hrs0avny/backports.zoneinfo
  Complete output (53 lines):
  /tmp/pip-build-env-x6o3nn2_/overlay/lib/python3.9/site-packages/setuptools/config/setupcfg.py:293: _DeprecatedConfig: Deprecated config in `setup.cfg`
  !!

          ********************************************************************************
          The license_file parameter is deprecated, use license_files instead.

          By 2023-Oct-30, you need to update your project and remove deprecated calls
          or your builds will no longer be supported.

          See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details.
          ********************************************************************************

  !!
    parsed = self.parsers.get(option_name, lambda x: x)(value)
  running bdist_wheel
  running build
  running build_py
  creating build
  creating build/lib.linux-aarch64-cpython-39
  creating build/lib.linux-aarch64-cpython-39/backports
  copying src/backports/__init__.py -> build/lib.linux-aarch64-cpython-39/backports
  creating build/lib.linux-aarch64-cpython-39/backports/zoneinfo
  copying src/backports/zoneinfo/__init__.py -> build/lib.linux-aarch64-cpython-39/backports/zoneinfo
  copying src/backports/zoneinfo/_common.py -> build/lib.linux-aarch64-cpython-39/backports/zoneinfo
  copying src/backports/zoneinfo/_tzpath.py -> build/lib.linux-aarch64-cpython-39/backports/zoneinfo
  copying src/backports/zoneinfo/_version.py -> build/lib.linux-aarch64-cpython-39/backports/zoneinfo
  copying src/backports/zoneinfo/_zoneinfo.py -> build/lib.linux-aarch64-cpython-39/backports/zoneinfo
  running egg_info
  writing src/backports.zoneinfo.egg-info/PKG-INFO
  writing dependency_links to src/backports.zoneinfo.egg-info/dependency_links.txt
  writing requirements to src/backports.zoneinfo.egg-info/requires.txt
  writing top-level names to src/backports.zoneinfo.egg-info/top_level.txt
  reading manifest file 'src/backports.zoneinfo.egg-info/SOURCES.txt'
  reading manifest template 'MANIFEST.in'
  warning: no files found matching '*.png' under directory 'docs'
  warning: no files found matching '*.svg' under directory 'docs'
  no previously-included directories found matching 'docs/_build'
  no previously-included directories found matching 'docs/_output'
  adding license file 'LICENSE'
  adding license file 'licenses/LICENSE_APACHE'
  writing manifest file 'src/backports.zoneinfo.egg-info/SOURCES.txt'
  copying src/backports/zoneinfo/__init__.pyi -> build/lib.linux-aarch64-cpython-39/backports/zoneinfo
  copying src/backports/zoneinfo/py.typed -> build/lib.linux-aarch64-cpython-39/backports/zoneinfo
  running build_ext
  building 'backports.zoneinfo._czoneinfo' extension
  creating build/temp.linux-aarch64-cpython-39
  creating build/temp.linux-aarch64-cpython-39/lib
  aarch64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/usr/include/python3.9 -c lib/zoneinfo_module.c -o build/temp.linux-aarch64-cpython-39/lib/zoneinfo_module.o -std=c99
  lib/zoneinfo_module.c:1:10: fatal error: Python.h: No such file or directory
      1 | #include "Python.h"
        |          ^~~~~~~~~~
  compilation terminated.
  error: command '/usr/bin/aarch64-linux-gnu-gcc' failed with exit code 1
  ----------------------------------------
  ERROR: Failed building wheel for backports.zoneinfo
Failed to build backports.zoneinfo
ERROR: Could not build wheels for backports.zoneinfo which use PEP 517 and cannot be installed directly

This error is because zoneinfo_module.c tries to load Python APIs and those are not installed with the python package by default (they are included in python3-dev).

There is additionally an issue somewhere in dependency resolution, because this package should not be required for Python 3.9 or later, due to the inclusion of zoneinfo in the Python standard library.

I think this may be because of how packages are being installed - the python3 package is actually Python 3.8, which requires the backport (since zoneinfo was introduced to the standard library in 3.9), so if you run pip install dateparser then the output will look like this:

# pip install dateparser
Collecting dateparser
  Downloading dateparser-1.1.8-py2.py3-none-any.whl (293 kB)
     |████████████████████████████████| 293 kB 2.9 MB/s 
Collecting regex!=2019.02.19,!=2021.8.27
  Downloading regex-2023.6.3-cp38-cp38-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (771 kB)
     |████████████████████████████████| 771 kB 7.0 MB/s 
Collecting pytz
  Downloading pytz-2023.3-py2.py3-none-any.whl (502 kB)
     |████████████████████████████████| 502 kB 7.6 MB/s 
Collecting python-dateutil
  Downloading python_dateutil-2.8.2-py2.py3-none-any.whl (247 kB)
     |████████████████████████████████| 247 kB 8.8 MB/s 
Collecting tzlocal
  Downloading tzlocal-5.0.1-py3-none-any.whl (20 kB)
Collecting six>=1.5
  Downloading six-1.16.0-py2.py3-none-any.whl (11 kB)
Collecting backports.zoneinfo; python_version < "3.9"
  Using cached backports.zoneinfo-0.2.1.tar.gz (74 kB)
  Installing build dependencies ... done
  Getting requirements to build wheel ... done
    Preparing wheel metadata ... done
Building wheels for collected packages: backports.zoneinfo
  Building wheel for backports.zoneinfo (PEP 517) ... done
  Created wheel for backports.zoneinfo: filename=backports.zoneinfo-0.2.1-cp38-cp38-linux_aarch64.whl size=82062 sha256=64191a3aba1b45c3eaeeda011757584902676234cbe733b32b5ad42f3a3988ca
  Stored in directory: /root/.cache/pip/wheels/c7/de/cc/c405827ed64f81b56142f1e0075a970b2731b00d21983d54fb
Successfully built backports.zoneinfo
Installing collected packages: regex, pytz, six, python-dateutil, backports.zoneinfo, tzlocal, dateparser
Successfully installed backports.zoneinfo-0.2.1 dateparser-1.1.8 python-dateutil-2.8.2 pytz-2023.3 regex-2023.6.3 six-1.16.0 tzlocal-5.0.1

If you instead run python3.9 pip install dateparser then it will correctly detect the zoneinfo included in the corelib:

# python3.9 -m pip install dateparser
Collecting dateparser
  Using cached dateparser-1.1.8-py2.py3-none-any.whl (293 kB)
Collecting regex!=2019.02.19,!=2021.8.27
  Downloading regex-2023.6.3-cp39-cp39-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (768 kB)
     |████████████████████████████████| 768 kB 3.0 MB/s 
Collecting pytz
  Using cached pytz-2023.3-py2.py3-none-any.whl (502 kB)
Collecting tzlocal
  Using cached tzlocal-5.0.1-py3-none-any.whl (20 kB)
Collecting python-dateutil
  Using cached python_dateutil-2.8.2-py2.py3-none-any.whl (247 kB)
Collecting six>=1.5
  Using cached six-1.16.0-py2.py3-none-any.whl (11 kB)
Installing collected packages: regex, pytz, tzlocal, six, python-dateutil, dateparser
Successfully installed dateparser-1.1.8 python-dateutil-2.8.2 pytz-2023.3 regex-2023.6.3 six-1.16.0 tzlocal-5.0.1

To sum up, there are a few issues here:

  1. dateparser seems to have a transitive dependency on backports.zoneinfo
  2. This backports.zoneinfo package should not be necessary with Python3.9 or later, but dependency resolution seems to require it anyways
  3. The image was missing a build toolchain (gcc or clang, part of build-essential) and Python headers are not installed by default (python3-dev)
  4. The system Python in this version of Ubuntu is 3.8, so pip install (or, I suppose, poetry install) will resolve standard library dependencies using the system Python, and thus try to install backports.zoneinfo. If you instead run python3.9 -m pip install, then it will resolve correctly using the Python 3.9 dependencies

We are considering removal of dateparser as a dependency, but that would require a gradual deprecation process as it would be a backward-incompatible change. I've created a related issue here: https://github.com/PrefectHQ/prefect/issues/10096

jawnsy commented 1 year ago

Closing this issue as complete, given the above. There is a follow-up item regarding possible removal of dateparser, but I think this issue should be resolved now. Thanks for using Prefect!