Hi, @StephanPreibisch and @hoerldavid!
There a new promising compression software Jetraw from DotPhoton, which is now compatible with Bioformats plugin in Fiji: https://github.com/Jetraw/Bio-Formats
I could successfully read TIFF files compressed with Jetraw in Fiji, but unfortunately not H5, which would be very important for SPIM community adoption. Do you have any plans of integration?
If you are curious and want to try opening a jetraw-compressed H5, here is a small example file compressed, with an XML header file manually added by me: https://drive.switch.ch/index.php/s/QvtxoLwJXWzYk2n
My naive expectation was that if it can be opened in Bioformats, it would be also possible to open in BigStitcher, but something goes wrong when I try this. Your input is very appreciated!
Hi, @StephanPreibisch and @hoerldavid! There a new promising compression software Jetraw from DotPhoton, which is now compatible with Bioformats plugin in Fiji: https://github.com/Jetraw/Bio-Formats I could successfully read TIFF files compressed with Jetraw in Fiji, but unfortunately not H5, which would be very important for SPIM community adoption. Do you have any plans of integration? If you are curious and want to try opening a jetraw-compressed H5, here is a small example file compressed, with an XML header file manually added by me: https://drive.switch.ch/index.php/s/QvtxoLwJXWzYk2n My naive expectation was that if it can be opened in Bioformats, it would be also possible to open in BigStitcher, but something goes wrong when I try this. Your input is very appreciated!