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PreibischLab / BigStitcher

ImgLib2/BDV implementation of Stitching for large datasets
GNU General Public License v2.0
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Split images raising #109

Closed boazmohar closed 2 years ago

boazmohar commented 2 years ago

When using Plugins\BigStitcher\Tools\SplitImages my XML file that was made with pybdv is raising the following:

(Fiji Is Just) ImageJ 2.3.0/1.53f51; Java 1.8.0_172 [64-bit]; Linux 4.18.0-305.3.1.el8_4.x86_64; 27418MB of 573233MB (4%)

java.lang.NullPointerException
    at net.preibisch.mvrecon.process.splitting.SplittingTools.splitImages(SplittingTools.java:166)
    at net.preibisch.mvrecon.fiji.plugin.Split_Views.split(Split_Views.java:85)
    at net.preibisch.mvrecon.fiji.plugin.Split_Views.split(Split_Views.java:154)
    at net.preibisch.mvrecon.fiji.plugin.Split_Views.run(Split_Views.java:71)
    at ij.IJ.runUserPlugIn(IJ.java:241)
    at ij.IJ.runPlugIn(IJ.java:204)
    at ij.Executer.runCommand(Executer.java:150)
    at ij.Executer.run(Executer.java:68)
    at java.lang.Thread.run(Thread.java:748)

Attached is the xml file as zip. C4_IHC3_v4_orig.zip

Any advice? @StephanPreibisch

StephanPreibisch commented 2 years ago

I suspect that the XML file was not written by BigStitcher but some other software, is that possible? There are some elements missing ... in any case, it should be fixed with the above commit. Now releasing 0.11.5 ...