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PreibischLab / BigStitcher

ImgLib2/BDV implementation of Stitching for large datasets
GNU General Public License v2.0
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Error while calculating pairwise shifts with dataset saved as compressed N5 #71

Closed HugoB closed 4 years ago

HugoB commented 4 years ago

Hello,

Using the dataset Grid_2d and the stitching steps provided on the BigStitcher page (https://imagej.net/BigStitcher), I have the following error in the console window when I want to stitch the dataset (during the calculation of the pairwise shifts) saved with the N5 format : ErrorStitchingN5

And the associated message in the Log window :

Failed to compute pairwise shift: java.util.concurrent.ExecutionException: java.lang.UnsupportedOperationException: not implemented yet

It works when I run it with the dataset saved with the HDF5 format.

StephanPreibisch commented 4 years ago

Hi, sorry for the delay, the GitHub message went to my spam folder. I fixed this with commit https://github.com/PreibischLab/BigStitcher/commit/876f427b9ff68aa803298e23e5e162e6b0f5d91c and updated Fiji.

Thanks so much for reporting!