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PreibischLab / BigStitcher

ImgLib2/BDV implementation of Stitching for large datasets
GNU General Public License v2.0
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[ERROR] Module threw error java.lang.NoSuchFieldError: list - When creating or loading xml datasets. #76

Open nhoeche opened 4 years ago

nhoeche commented 4 years ago

Hello,

recently, I can't load or create xml datasets with bigstitcher.

The Console output:

[ERROR] Module threw error
java.lang.NoSuchFieldError: list
    at bdv.viewer.BasicViewerState.notifyListeners(BasicViewerState.java:1622)
    at bdv.viewer.BasicViewerState.addSources(BasicViewerState.java:724)
    at bdv.viewer.SynchronizedViewerState.addSources(SynchronizedViewerState.java:496)
    at bdv.viewer.state.ViewerState.<init>(ViewerState.java:81)
    at bdv.viewer.ViewerPanel.<init>(ViewerPanel.java:248)
    at bdv.viewer.ViewerFrame.<init>(ViewerFrame.java:103)
    at bdv.BigDataViewer.<init>(BigDataViewer.java:335)
    at bdv.BigDataViewer.open(BigDataViewer.java:491)
    at net.preibisch.stitcher.gui.popup.BDVPopupStitching.createBDV(BDVPopupStitching.java:301)
    at net.preibisch.stitcher.gui.StitchingExplorerPanel.<init>(StitchingExplorerPanel.java:205)
    at net.preibisch.stitcher.gui.StitchingExplorer.<init>(StitchingExplorer.java:113)
    at net.preibisch.stitcher.plugin.BigStitcher.run(BigStitcher.java:80)
    at org.scijava.command.CommandModule.run(CommandModule.java:196)
    at org.scijava.module.ModuleRunner.run(ModuleRunner.java:165)
    at org.scijava.module.ModuleRunner.call(ModuleRunner.java:124)
    at org.scijava.module.ModuleRunner.call(ModuleRunner.java:63)
    at org.scijava.thread.DefaultThreadService.lambda$wrap$2(DefaultThreadService.java:225)
    at java.base/java.util.concurrent.FutureTask.run(FutureTask.java:264)
    at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
    at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
    at java.base/java.lang.Thread.run(Thread.java:834)

Exception window:

(Fiji Is Just) ImageJ 2.1.0/1.53c; Java 11.0.8 [64-bit]; Linux 5.4.0-42-generic; 89MB of 20000MB (<1%)

java.lang.RuntimeException: java.util.concurrent.ExecutionException: java.lang.NoSuchFieldError: list
    at net.imagej.legacy.LegacyService.runLegacyCompatibleCommand(LegacyService.java:307)
    at net.imagej.legacy.DefaultLegacyHooks.interceptRunPlugIn(DefaultLegacyHooks.java:166)
    at ij.IJ.runPlugIn(IJ.java)
    at ij.Executer.runCommand(Executer.java:150)
    at ij.Executer.run(Executer.java:68)
    at java.base/java.lang.Thread.run(Thread.java:834)
Caused by: java.util.concurrent.ExecutionException: java.lang.NoSuchFieldError: list
    at java.base/java.util.concurrent.FutureTask.report(FutureTask.java:122)
    at java.base/java.util.concurrent.FutureTask.get(FutureTask.java:191)
    at net.imagej.legacy.LegacyService.runLegacyCompatibleCommand(LegacyService.java:303)
    ... 5 more
Caused by: java.lang.NoSuchFieldError: list
    at bdv.viewer.BasicViewerState.notifyListeners(BasicViewerState.java:1622)
    at bdv.viewer.BasicViewerState.addSources(BasicViewerState.java:724)
    at bdv.viewer.SynchronizedViewerState.addSources(SynchronizedViewerState.java:496)
    at bdv.viewer.state.ViewerState.<init>(ViewerState.java:81)
    at bdv.viewer.ViewerPanel.<init>(ViewerPanel.java:248)
    at bdv.viewer.ViewerFrame.<init>(ViewerFrame.java:103)
    at bdv.BigDataViewer.<init>(BigDataViewer.java:335)
    at bdv.BigDataViewer.open(BigDataViewer.java:491)
    at net.preibisch.stitcher.gui.popup.BDVPopupStitching.createBDV(BDVPopupStitching.java:301)
    at net.preibisch.stitcher.gui.StitchingExplorerPanel.<init>(StitchingExplorerPanel.java:205)
    at net.preibisch.stitcher.gui.StitchingExplorer.<init>(StitchingExplorer.java:113)
    at net.preibisch.stitcher.plugin.BigStitcher.run(BigStitcher.java:80)
    at org.scijava.command.CommandModule.run(CommandModule.java:196)
    at org.scijava.module.ModuleRunner.run(ModuleRunner.java:165)
    at org.scijava.module.ModuleRunner.call(ModuleRunner.java:124)
    at org.scijava.module.ModuleRunner.call(ModuleRunner.java:63)
    at org.scijava.thread.DefaultThreadService.lambda$wrap$2(DefaultThreadService.java:225)
    at java.base/java.util.concurrent.FutureTask.run(FutureTask.java:264)
    at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
    at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
    ... 1 more

ImageJ version and system info above. BigStitcher Log:

Using spimdata version: 0.9-revision
Using multiview-reconstruction version: 0.7.3
angles selected: 0
channels selected: 0
illuminations selected: 0
tiles selected: 0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 121, 122, 123, 124, 125, 126, 127, 128, 129, 130, 131, 132, 133, 134, 135, 136, 137, 138, 139, 140, 141, 142, 143, 144, 145, 146, 147, 148, 149, 150, 151, 152, 153, 154, 155, 156, 157, 158, 159, 160, 161, 162, 163, 164, 165, 166, 167, 168, 169, 170, 171, 172, 173, 174, 175, 176, 177, 178, 179, 180, 181, 182, 183, 184, 185, 186, 187, 188, 189, 190, 191, 192, 193, 194, 195, 196, 197, 198, 199, 200, 201, 202, 203, 204, 205, 206, 207, 208, 209, 210, 211, 212, 213, 214, 215, 216, 217, 218, 219, 220, 221, 222, 223, 224, 225, 226, 227, 228, 229, 230, 231, 232, 233, 234, 235, 236, 237, 238, 239, 240, 241, 242, 243, 244, 245, 246, 247, 248, 249, 250, 251, 252, 253, 254, 255, 256, 257, 258, 259, 260, 261, 262, 263, 264, 265, 266, 267, 268, 269, 270, 271, 272, 273, 274, 275, 276, 277, 278, 279, 280, 281, 282, 283, 284, 285, 286, 287, 288, 289, 290, 291, 292, 293, 294, 295, 296, 297, 298, 299, 300, 301, 302, 303, 304, 305, 306, 307, 308, 309, 310, 311, 312, 313, 314, 315, 316, 317, 318, 319, 320, 321, 322, 323, 324, 325, 326, 327, 328, 329, 330, 331, 332, 333, 334, 335, 336, 337, 338, 339
Timepoints selected: 0