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PreibischLab / BigStitcher

ImgLib2/BDV implementation of Stitching for large datasets
GNU General Public License v2.0
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Read tile positions from file in macro #94

Closed lambdamoses closed 3 years ago

lambdamoses commented 3 years ago

I used BigStitcher to stitch a few images whose coordinates are in a tile configuration file. Also, I recorded a macro to automate this for future datasets. However, when I see the macro, it only says move_tiles_to_grid_(per_angle)?=[Do not move Tiles to Grid (use Metadata if available)]; the tile configuration file appears nowhere in the macro. As my images don't entirely fit into a grid, I created blank images to make them a grid just for the sake of macros. However, using the tile configuration file still seems more straightforward. Is there any way to use the tile configuration file and record that in a macro?

StephanPreibisch commented 3 years ago

Hi, did you check out the following command? It sounds like this should give you that possibility?

Plugins > BigStitcher > Batch Processing > Tools > Load TileConfiguration from File ...

lambdamoses commented 3 years ago

Ah, I see. Thanks!