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PriceLab / TReNA-Legacy

Fit transcriptional regulatory networks using gene expression, priors, machine learning
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more install dependancies #2

Closed bheavner closed 7 years ago

bheavner commented 8 years ago

"Error in library(RUnit) : there is no package called ‘RUnit’"

bheavner commented 8 years ago

(easily resolved by installing the package, but the dependency isn't mentioned in the readme)

paul-shannon commented 8 years ago

source(“http://bioconductor.org/biocLite.R”) biocLite(“RUnit”)

On Mar 21, 2016, at 3:43 PM, Ben Heavner notifications@github.com wrote:

"Error in library(RUnit) : there is no package called ‘RUnit’"

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bheavner commented 8 years ago

Is that preferable to install.packages("RUnit") ?

I did that, then...

> runTests()
[1] --- test_emptyConstructor
[1] --- test_developAndFitDummyTestData
[1] --- test_fitDummyData
[1] begining cross-validation for glmnet, using 10 tfs, target gene.01
[1] glmnet fit with lambda 1.346926
[1] TRUE
paul-shannon commented 8 years ago

always preferable! It runs on top of install.packages, adds considerable ease.

On Mar 21, 2016, at 3:45 PM, Ben Heavner notifications@github.com wrote:

Is that preferable to install.packages("RUnit") ?

I did that, then...

runTests() [1] --- test_emptyConstructor [1] --- test_developAndFitDummyTestData [1] --- test_fitDummyData [1] begining cross-validation for glmnet, using 10 tfs, target gene.01 [1] glmnet fit with lambda 1.346926 [1] TRUE

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marichards commented 7 years ago

Closing this...RUnit is included in the "Suggests" portion of the DESCRIPTION file, which is the proper place for it.